Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8352987.1

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Reverse (-)

186 .. 962

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8352987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggctgctggcttagtagatgctaatggaaacaatttgaaacctggtacattggttgtagatctggggattcctcttcaggctttgccatgcctggactctaaccaggttaccagcctactctctgctgatagtaaacctgccctgaaaaagagaaagagaaaggagaaagtagatccaggggttcctgttcaagctgacggtattccagatttgaatggaaatggtgctgaatgccttacacctccaagtaaacccgagcggaagaagaggaggagaaaaggagaaggtctagcaactgctctcctcttgacctttgcctcaggagtcccaatgccttcaaaggatgatttaatttcaaccttttgtaggtttggacccttgaaagaatcagagacacagtttttgacagatcctagtagtgcacaggttgtattcatggaaagtgctgatgctggagaagcatttcagagtttagaaaagaacaacccttttggcacaaaccttgtatcttacaggcgctttaatcttccatcagtgtccaaggttttagccacaagcctagcctctccgcctacaaagagattgctgagtcctgtacaatctcctggcaagggaccttgccttgacgtcataaggcagaatcttcagatgatgacatcaatgctggagaagtcgggtgatactctttctccagagatgagaaccaaactggagtgtgaaataaaaggcctcctacagaaggtgagctccacagctggttcttcctctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko04064 ko04068 ko04110 ko04115 ko04210 ko04214 ko04218 ko05165 ko05166 ko05202 ko05206 map01524 map03440 map04064 map04068 map04110 map04115 map04210 map04214 map04218 map05165 map05166 map05202 map05206

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase PWWP

Protein Analysis

258

Amino Acids

27.48

Weight (kDa)

9.19

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	2 cut(s)	262, 572
AclWI	GGATC	2 cut(s)	170, 407
AcuI	CTGAAG	2 cut(s)	62, 632
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	2 cut(s)	49, 600
AfiI	CCNNNNNNNGG	3 cut(s)	369, 614, 742
AgsI	TTSAA	6 cut(s)	40, 194, 217, 342, 360, 385
AjnI	CCWGG	5 cut(s)	43, 93, 105, 178, 607
AluBI	AGCT	3 cut(s)	197, 750, 758
AluI	AGCT	3 cut(s)	197, 750, 758
Alw21I	GWGCWC	2 cut(s)	427, 752
Alw26I	GTCTC	1 cut(s)	389
Alw44I	GTGCAC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	170, 407
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	730
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	388, 420
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	377, 617
AsuHPI	GGTGA	2 cut(s)	692, 757
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	377, 617
AxyI	CCTNAGG	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BanII	GRGCYC	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	427, 752
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	5 cut(s)	45, 95, 107, 180, 609
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	293, 417, 563
BfmI	CTRYAG	1 cut(s)	737
BfoI	RGCGCY	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	5 cut(s)	45, 95, 107, 180, 609
Bme18I	GGWCC	2 cut(s)	377, 617
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	377, 617
BmiI	GGNNCC	3 cut(s)	186, 379, 618
BmrFI	CCNGG	5 cut(s)	45, 95, 107, 180, 609
BmsI	GCATC	2 cut(s)	10, 442
BpmI	CTGGAG	4 cut(s)	477, 678, 689, 734
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	179, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 614, 742
Bse1I	ACTGG	1 cut(s)	717
Bse21I	CCTNAGG	1 cut(s)	322
BseBI	CCWGG	5 cut(s)	45, 95, 107, 180, 609
BseDI	CCNNGG	2 cut(s)	179, 543
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	3 cut(s)	369, 614, 742
BseMII	CTCAG	2 cut(s)	336, 581
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	3 cut(s)	286, 289, 296
BseSI	GKGCMC	1 cut(s)	427
BshFI	GGCC	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	427, 752
BsiHKCI	CYCGRG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	314, 630
BslI	CCNNNNNNNGG	3 cut(s)	369, 614, 742
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	2 cut(s)	314, 630
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	732
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	427, 752
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	61, 175, 412
BspACI	CCGC	2 cut(s)	262, 572
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	2 cut(s)	335, 582
BspLI	GGNNCC	3 cut(s)	186, 379, 618
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	170, 407
BsrBI	CCGCTC	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	2 cut(s)	179, 543
BssMI	GATC	3 cut(s)	61, 175, 412
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	5 cut(s)	45, 95, 107, 180, 609
Bst4CI	ACNGT	2 cut(s)	203, 402
Bst6I	CTCTTC	2 cut(s)	81, 263
BstACI	GRCGYC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	3 cut(s)	13, 322, 590
BstEII	GGTNACC	1 cut(s)	109
BstENI	CCTNNNNNAGG	2 cut(s)	367, 740
BstF5I	GGATG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	3 cut(s)	64, 178, 415
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	61, 175, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	5 cut(s)	45, 95, 107, 180, 609
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	5 cut(s)	43, 93, 105, 178, 607
BstSFI	CTRYAG	1 cut(s)	737
BstSLI	GKGCMC	1 cut(s)	427
BstX2I	RGATCY	3 cut(s)	61, 175, 412
BstYI	RGATCY	3 cut(s)	61, 175, 412
Bsu36I	CCTNAGG	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	732
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	377, 617
CsiI	ACCWGGT	2 cut(s)	43, 105
Csp6I	GTAC	2 cut(s)	48, 599
CviAII	CATG	2 cut(s)	90, 439
CviQI	GTAC	2 cut(s)	48, 599
DdeI	CTNAG	3 cut(s)	13, 322, 590
DpnI	GATC	3 cut(s)	63, 177, 414
DpnII	GATC	3 cut(s)	61, 175, 412
Eam1104I	CTCTTC	2 cut(s)	81, 263
EarI	CTCTTC	2 cut(s)	81, 263
EciI	GGCGGA	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	752
Eco47I	GGWCC	2 cut(s)	377, 617
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	2 cut(s)	62, 632
Eco81I	CCTNAGG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	750
EcoNI	CCTNNNNNAGG	2 cut(s)	367, 740
EcoO109I	RGGNCCY	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	109
EcoRII	CCWGG	5 cut(s)	43, 93, 105, 178, 607
EcoT14I	CCWWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	2 cut(s)	93, 442
FaiI	YATR	3 cut(s)	91, 440, 635
FaqI	GGGAC	2 cut(s)	314, 630
FatI	CATG	2 cut(s)	89, 438
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	293, 417, 563
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	4 cut(s)	477, 678, 689, 734
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	1 cut(s)	732
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	2 cut(s)	93, 442
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HinfI	GANTC	6 cut(s)	70, 98, 327, 389, 592, 643
HphI	GGTGA	2 cut(s)	692, 757
Hpy166II	GTNNAC	3 cut(s)	137, 254, 425
Hpy188I	TCNGA	3 cut(s)	394, 471, 651
Hpy188III	TCNNGA	4 cut(s)	209, 310, 324, 695
Hpy8I	GTNNAC	3 cut(s)	137, 254, 425
HpyAV	CCTTC	3 cut(s)	281, 348, 736
HpyCH4III	ACNGT	2 cut(s)	203, 402
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	3 cut(s)	13, 322, 590
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	2 cut(s)	93, 442
HspAI	GCGC	1 cut(s)	520
Kzo9I	GATC	3 cut(s)	61, 175, 412
LmnI	GCTCC	1 cut(s)	755
LweI	GCATC	2 cut(s)	10, 442
MabI	ACCWGGT	2 cut(s)	43, 105
MaeI	CTAG	3 cut(s)	293, 417, 563
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	63, 177, 414
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	3 cut(s)	61, 175, 412
MboII	GAAGA	6 cut(s)	68, 277, 280, 521, 638, 756
MflI	RGATCY	3 cut(s)	61, 175, 412
MhlI	GDGCHC	2 cut(s)	427, 752
MluCI	AATT	2 cut(s)	34, 354
MlyI	GAGTC	3 cut(s)	92, 336, 601
MnlI	CCTC	8 cut(s)	84, 255, 264, 267, 317, 331, 577, 743
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	353, 525, 775
MspA1I	CMGCKG	1 cut(s)	758
MspR9I	CCNGG	5 cut(s)	45, 95, 107, 180, 609
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	5 cut(s)	45, 95, 107, 180, 609
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	3 cut(s)	61, 175, 412
NlaIII	CATG	2 cut(s)	93, 442
NlaIV	GGNNCC	3 cut(s)	186, 379, 618
PceI	AGGCCT	1 cut(s)	732
PctI	GAATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	70, 389, 643
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	92, 335, 600
PpsI	GAGTC	3 cut(s)	92, 335, 600
PpuMI	RGGWCCY	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	5 cut(s)	43, 93, 105, 178, 607
PspEI	GGTNACC	1 cut(s)	109
PspGI	CCWGG	5 cut(s)	43, 93, 105, 178, 607
PspN4I	GGNNCC	3 cut(s)	186, 379, 618
PspPI	GGNCC	2 cut(s)	377, 617
PspPPI	RGGWCCY	1 cut(s)	617
PsuI	RGATCY	3 cut(s)	61, 175, 412
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	49, 600
RsaNI	GTAC	2 cut(s)	48, 599
SacI	GAGCTC	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	353, 525, 775
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	61, 175, 412
Sau96I	GGNCC	2 cut(s)	377, 617
SchI	GAGTC	3 cut(s)	92, 336, 601
ScrFI	CCNGG	5 cut(s)	45, 95, 107, 180, 609
SduI	GDGCHC	2 cut(s)	427, 752
SexAI	ACCWGGT	2 cut(s)	43, 105
SfaNI	GCATC	2 cut(s)	10, 442
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	2 cut(s)	377, 617
Sse9I	AATT	2 cut(s)	34, 354
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	2 cut(s)	262, 572
SspMI	CTAG	3 cut(s)	293, 417, 563
SstI	GAGCTC	1 cut(s)	752
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	5 cut(s)	43, 93, 105, 178, 607
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	203, 402
TaiI	ACGT	1 cut(s)	633
TasI	AATT	2 cut(s)	34, 354
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	3 cut(s)	70, 389, 643
Tru1I	TTAA	3 cut(s)	353, 525, 775
Tru9I	TTAA	3 cut(s)	353, 525, 775
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	543
VneI	GTGCAC	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	377, 617
XagI	CCTNNNNNAGG	2 cut(s)	367, 740
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	3 cut(s)	293, 417, 563
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.