Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Reverse (-)

15292206 .. 15293578

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTTGAAGAATTTAGAGTTGGGAAGATGGTTGAGGATGTTAGAGTTGAGAAGATGATGGTTGAAGACGGTAGAGTTGACAGGATGGTTAAATATGATGGAGTTAAGGAGAAGGTGGATGAGGCCAAAGCATTCGAATCGAGTATGATGGGTGAAGATGATCAAGATTATGATTATGATTTTTGTGTGGGTGATATTGTGTGGGTTAAAACCAAAATAAACACACGGTGGCCTGCTAGAATTCATGATCCTGCAGATGCATCAAAGTACGGAGGAATTGAAAGTGACCAAGAAGACTCTGCTAGTTGGATTTCAGGGCAGAGCAAGGCTAGAATTTTCATTAAAGCTGTAGAGAAAGCTCTTGAAGAGTTTGGTCGCCGTGTCAAATTGAATATGACTTGTGCCTGTGTTTTGAAAGAAGATCGACTTTCAGTTCATTATGCTGCATCTAAGGAAGGAGTTTTGGTTTCTAACCGCAACTCCAGTGAACTCGGTGAATTTTCAGTTACTCGTTTTGATTCTGCAAAGTTCCTTGCACATCTGAAAAATCTAGCACATCTTTTTATAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko04064 ko04068 ko04110 ko04115 ko04210 ko04214 ko04218 ko05165 ko05166 ko05202 ko05206 map01524 map03440 map04064 map04068 map04110 map04115 map04210 map04214 map04218 map05165 map05166 map05202 map05206

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase PWWP

Protein Analysis

190

Amino Acids

21.63

Weight (kDa)

5.36

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	4 cut(s)	11, 240, 333, 497
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	6 cut(s)	8, 65, 281, 365, 391, 415
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	347, 359
AluI	AGCT	2 cut(s)	347, 359
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	123, 230
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	4 cut(s)	11, 240, 333, 497
AsuHPI	GGTGA	3 cut(s)	164, 203, 506
AsuII	TTCGAA	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	72, 300
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	5 cut(s)	22, 52, 79, 92, 142
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BclI	TGATCA	1 cut(s)	160
BfaI	CTAG	4 cut(s)	237, 303, 330, 551
BfmI	CTRYAG	2 cut(s)	252, 348
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmsI	GCATC	3 cut(s)	247, 269, 455
BpiI	GAAGAC	2 cut(s)	72, 300
BpmI	CTGGAG	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	135
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 464, 480, 494
Bse1I	ACTGG	1 cut(s)	483
BseGI	GGATG	3 cut(s)	43, 90, 124
BseNI	ACTGG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	2 cut(s)	125, 232
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	125, 232
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	160, 247, 421
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	2 cut(s)	125, 232
BspHI	TCATGA	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	160, 247, 421
Bst4CI	ACNGT	2 cut(s)	71, 228
Bst6I	CTCTTC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	3 cut(s)	43, 90, 124
BstKTI	GATC	3 cut(s)	163, 250, 424
BstMBI	GATC	3 cut(s)	160, 247, 421
BstSFI	CTRYAG	2 cut(s)	252, 348
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	2 cut(s)	72, 300
BsuRI	GGCC	2 cut(s)	125, 232
BtsCI	GGATG	3 cut(s)	43, 90, 124
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	5 cut(s)	125, 232, 329, 347, 359
CviKI_1	RGCY	5 cut(s)	125, 232, 329, 347, 359
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	162, 249, 423
DpnII	GATC	3 cut(s)	160, 247, 421
DraIII	CACNNNGTG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	1 cut(s)	248
FaiI	YATR	9 cut(s)	96, 146, 171, 177, 246, 395, 441, 566, 571
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	3 cut(s)	50, 97, 131
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	4 cut(s)	237, 303, 330, 551
GluI	GCNGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	2 cut(s)	125, 232
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	137, 296, 518
HphI	GGTGA	3 cut(s)	164, 203, 506
Hpy166II	GTNNAC	2 cut(s)	79, 488
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	3 cut(s)	164, 245, 362
Hpy8I	GTNNAC	2 cut(s)	79, 488
HpyAV	CCTTC	2 cut(s)	106, 449
HpyCH4III	ACNGT	2 cut(s)	71, 228
HpyCH4V	TGCA	5 cut(s)	254, 260, 446, 524, 536
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	160, 247, 421
LpnPI	CCDG	6 cut(s)	67, 246, 264, 300, 418, 496
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	3 cut(s)	247, 269, 455
MaeI	CTAG	4 cut(s)	237, 303, 330, 551
MaeIII	GTNAC	2 cut(s)	284, 505
MalI	GATC	3 cut(s)	162, 249, 423
MboI	GATC	3 cut(s)	160, 247, 421
MboII	GAAGA	8 cut(s)	20, 37, 64, 77, 167, 305, 377, 431
MluCI	AATT	6 cut(s)	11, 240, 276, 333, 386, 497
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	28, 115, 266
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	4 cut(s)	90, 105, 207, 342
Mva1269I	GAATGC	1 cut(s)	131
NdeII	GATC	3 cut(s)	160, 247, 421
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	137, 518
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	90, 105, 207, 342
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	160, 247, 421
SchI	GAGTC	1 cut(s)	290
SetI	ASST	3 cut(s)	117, 349, 361
SfaNI	GCATC	3 cut(s)	247, 269, 455
SfcI	CTRYAG	2 cut(s)	252, 348
SfuI	TTCGAA	1 cut(s)	135
Sse9I	AATT	6 cut(s)	11, 240, 276, 333, 386, 497
SsiI	CCGC	1 cut(s)	475
SspMI	CTAG	4 cut(s)	237, 303, 330, 551
TaaI	ACNGT	2 cut(s)	71, 228
TaqI	TCGA	3 cut(s)	135, 140, 424
TasI	AATT	6 cut(s)	11, 240, 276, 333, 386, 497
TfiI	GAWTC	2 cut(s)	137, 518
Tru1I	TTAA	4 cut(s)	90, 105, 207, 342
Tru9I	TTAA	4 cut(s)	90, 105, 207, 342
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	233, 328, 425
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	4 cut(s)	11, 240, 333, 497
XspI	CTAG	4 cut(s)	237, 303, 330, 551
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.