Rmu_sc0015894.1_g000001

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015894.1
OG0001132
Physical Location & Seq
Forward (+)
1 .. 3193
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015894.1_g000001.1.cds

Sequence Viewer

Length: 1450 bp
cgctgccaacacgtcaagcttagttcaaagccctgcaactgctgtacagggtatgaatggaaaccttggcaagaaaaggggacgaccaaagttagggagatccaagactaaatccctttctgggatgtcagatgtcaattcaagcattgcccctgatgtccaaatggtacaagattcttcatctgtcggccttctcatgccctgtgataagcctaagcaaaagaaaagagagaaggtggaaggagcaagtcaagcaagtttgcagactaaacaaacaattggtatacctgatttgaatggtaacagtgttctacctactgttctggttaataaacaacagactattggccatgctgtttctgaaggtaacattcagctagaaaagagattggggacggaaactgcttcagagcactcaatagccaatatggctgctggcttagtagatgctaatggaaacaatttgaaacctggtacattggttgtagatctggggattcctcttcaggctttgccaggcctggactctaaccaggttaccagcctactctctgctgatagtaaacctgccctgaaaaagagaaagagaaaggagaaagtagatccaggggttcctgttcaagctgacggtattccagatttgaatggaaatggtgctgaatgccttacacctccaagtaaacccgagcggaagaagaggaggagaaaaggagaaggtctagcaactgctctcctcttgacatttgcgtccggaattccactgccttcaaaagatgatttaatctcaacattttgtaggtttggacccttgaaagaatcggagactcagttattaaaagactctagtagtgcacaggttgtattcatggaaagtgctgatgctggagaagcatttcagagtttagaaaagaacaacccttttggcacaaaccttgtatcttacaggcgctttaatcttccatcagtgtccaaggttttagccacaagcctagcctctccgcctacaaagagattgctgagtcctgtacaatctcctggcaagggaccttgccttgacgtcataaggcagaatcttcagatgatgacatcaatgctggagaagtcgggtgatactctttctccagagatgagaaccaaactggagtgtgaaataaaaggcctcctacagaaggtgagctccacagctggtattggctcactgttctggcagggcttctgccagaccttgttgataaggttgatggaagagcctgctgcatatggaaagttagggttggccaatctactggaactgagggaagaatgcttgagggagttccaacttgttgatgcttatagaagtataaaacaaagggaaaacgaggcgtcacttgctgttttacccgatctgctcctggaacttgatagtatgagtgaggaacacttcccatacttcatccatagagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

482

Amino Acids

51.98

Weight (kDa)

8.98

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AatII GACGTC 1 cut(s) 1060
Acc36I ACCTGC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 689
AccI GTMKAC 1 cut(s) 284
AccIII TCCGGA 1 cut(s) 750
AciI CCGC 2 cut(s) 689, 999
AclWI GGATC 2 cut(s) 94, 597
AcoI YGGCCR 2 cut(s) 347, 1276
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 4 cut(s) 382, 391, 489, 1059
AcyI GRCGYC 2 cut(s) 1057, 1365
AfaI GTAC 4 cut(s) 46, 169, 476, 1027
AfiI CCNNNNNNNGG 4 cut(s) 93, 121, 1041, 1169
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 8 cut(s) 27, 142, 296, 467, 621, 644, 769, 812
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 7 cut(s) 470, 515, 520, 532, 605, 1034, 1393
AluBI AGCT 5 cut(s) 19, 377, 624, 1177, 1185
AluI AGCT 5 cut(s) 19, 377, 624, 1177, 1185
Alw21I GWGCWC 3 cut(s) 415, 854, 1179
Alw26I GTCTC 1 cut(s) 816
Alw44I GTGCAC 1 cut(s) 850
AlwI GGATC 2 cut(s) 94, 597
Ama87I CYCGRG 1 cut(s) 684
Aor13HI TCCGGA 1 cut(s) 750
AoxI GGCC 5 cut(s) 188, 347, 518, 1157, 1276
ApaLI GTGCAC 1 cut(s) 850
ApeKI GCWGC 3 cut(s) 3, 432, 1254
ApoI RAATTY 1 cut(s) 754
Asp700I GAANNNNTTC 1 cut(s) 892
AspLEI GCGC 1 cut(s) 949
AspS9I GGNCC 2 cut(s) 804, 1044
AsuHPI GGTGA 2 cut(s) 1119, 1184
AvaI CYCGRG 1 cut(s) 684
AvaII GGWCC 2 cut(s) 804, 1044
BaeGI GKGCMC 1 cut(s) 854
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BalI TGGCCA 2 cut(s) 349, 1278
BanII GRGCYC 1 cut(s) 1179
Bbv12I GWGCWC 3 cut(s) 415, 854, 1179
BbvI GCAGC 2 cut(s) 419, 1241
BccI CCATC 2 cut(s) 968, 1235
BciT130I CCWGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
BcoDI GTCTC 1 cut(s) 816
BfaI CTAG 4 cut(s) 378, 720, 844, 990
BfmI CTRYAG 1 cut(s) 1164
BfoI RGCGCY 1 cut(s) 950
BfuAI ACCTGC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 429
BglII AGATCT 1 cut(s) 488
BisI GCNGC 3 cut(s) 4, 433, 1255
BlsI GCNGC 3 cut(s) 5, 434, 1256
Bme1390I CCNGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
Bme18I GGWCC 2 cut(s) 804, 1044
BmeT110I CYCGRG 1 cut(s) 684
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 804, 1044
BmiI GGNNCC 3 cut(s) 613, 806, 1045
BmrFI CCNGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
BmsI GCATC 3 cut(s) 437, 869, 1319
BpmI CTGGAG 4 cut(s) 904, 1105, 1116, 1161
Bpu10I CCTNAGC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 1328
BsaHI GRCGYC 2 cut(s) 1057, 1365
BsaJI CCNNGG 3 cut(s) 65, 606, 970
BsaWI WCCGGW 1 cut(s) 750
BsaXI ACNNNNNCTCC 4 cut(s) 813, 843, 1103, 1133
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 121, 1041, 1169
Bse1I ACTGG 2 cut(s) 1144, 1291
Bse3DI GCAATG 1 cut(s) 145
BseAI TCCGGA 1 cut(s) 750
BseBI CCWGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
BseDI CCNNGG 3 cut(s) 65, 606, 970
BseGI GGATG 2 cut(s) 130, 1435
BseLI CCNNNNNNNGG 4 cut(s) 93, 121, 1041, 1169
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 840, 1008, 1284
BseNI ACTGG 2 cut(s) 1144, 1291
BseRI GAGGAG 3 cut(s) 713, 716, 723
BseSI GKGCMC 1 cut(s) 854
BseXI GCAGC 2 cut(s) 419, 1241
BshFI GGCC 5 cut(s) 190, 349, 520, 1159, 1278
BsiHKAI GWGCWC 3 cut(s) 415, 854, 1179
BsiHKCI CYCGRG 1 cut(s) 684
BsiSI CCGG 1 cut(s) 751
BslFI GGGAC 3 cut(s) 94, 407, 1057
BslI CCNNNNNNNGG 4 cut(s) 93, 121, 1041, 1169
BsmAI GTCTC 1 cut(s) 816
BsmFI GGGAC 3 cut(s) 94, 407, 1057
BsmI GAATGC 2 cut(s) 666, 1308
BsnI GGCC 5 cut(s) 190, 349, 520, 1159, 1278
BsoBI CYCGRG 1 cut(s) 684
Bsp1286I GDGCHC 3 cut(s) 415, 854, 1179
Bsp13I TCCGGA 1 cut(s) 750
Bsp1407I TGTACA 2 cut(s) 44, 1025
Bsp143I GATC 4 cut(s) 99, 488, 602, 1385
BspACI CCGC 2 cut(s) 689, 999
BspANI GGCC 5 cut(s) 190, 349, 520, 1159, 1278
BspCNI CTCAG 3 cut(s) 839, 1009, 1285
BspEI TCCGGA 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 613, 806, 1045
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 2 cut(s) 94, 597
BspQI GCTCTTC 1 cut(s) 1240
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 2 cut(s) 44, 1025
BsrI ACTGG 2 cut(s) 1144, 1291
BssECI CCNNGG 3 cut(s) 65, 606, 970
BssMI GATC 4 cut(s) 99, 488, 602, 1385
BssNAI GTATAC 1 cut(s) 285
BssNI GRCGYC 2 cut(s) 1057, 1365
BssT1I CCWWGG 2 cut(s) 65, 970
Bst1107I GTATAC 1 cut(s) 285
Bst2UI CCWGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
Bst4CI ACNGT 4 cut(s) 306, 320, 630, 1201
Bst6I CTCTTC 3 cut(s) 508, 690, 1240
BstACI GRCGYC 2 cut(s) 1057, 1365
BstAUI TGTACA 2 cut(s) 44, 1025
BstC8I GCNNGC 2 cut(s) 437, 1252
BstDEI CTNAG 6 cut(s) 20, 214, 440, 826, 1017, 1293
BstEII GGTNACC 1 cut(s) 536
BstENI CCTNNNNNAGG 1 cut(s) 1167
BstF5I GGATG 2 cut(s) 130, 1435
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 1 cut(s) 949
BstKTI GATC 4 cut(s) 102, 491, 605, 1388
BstMAI GTCTC 1 cut(s) 816
BstMBI GATC 4 cut(s) 99, 488, 602, 1385
BstMWI GCNNNNNNNGC 4 cut(s) 252, 429, 888, 1371
BstNI CCWGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 7 cut(s) 470, 515, 520, 532, 605, 1034, 1393
BstSFI CTRYAG 1 cut(s) 1164
BstSLI GKGCMC 1 cut(s) 854
BstV1I GCAGC 2 cut(s) 419, 1241
BstX2I RGATCY 3 cut(s) 99, 488, 602
BstXI CCANNNNNNTGG 1 cut(s) 1286
BstYI RGATCY 3 cut(s) 99, 488, 602
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 5 cut(s) 190, 349, 520, 1159, 1278
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 130, 1435
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 4 cut(s) 311, 759, 970, 1197
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 2 cut(s) 437, 1252
CfoI GCGC 1 cut(s) 949
Cfr13I GGNCC 2 cut(s) 804, 1044
CseI GACGC 2 cut(s) 736, 1354
CsiI ACCWGGT 2 cut(s) 470, 532
Csp6I GTAC 4 cut(s) 45, 168, 475, 1026
CviAII CATG 3 cut(s) 197, 351, 866
CviQI GTAC 4 cut(s) 45, 168, 475, 1026
DdeI CTNAG 6 cut(s) 20, 214, 440, 826, 1017, 1293
DpnI GATC 4 cut(s) 101, 490, 604, 1387
DpnII GATC 4 cut(s) 99, 488, 602, 1385
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
EaeI YGGCCR 2 cut(s) 347, 1276
Eam1104I CTCTTC 3 cut(s) 508, 690, 1240
EarI CTCTTC 3 cut(s) 508, 690, 1240
EciI GGCGGA 1 cut(s) 988
Ecl136II GAGCTC 1 cut(s) 1177
Eco130I CCWWGG 2 cut(s) 65, 970
Eco147I AGGCCT 2 cut(s) 520, 1159
Eco24I GRGCYC 1 cut(s) 1179
Eco47I GGWCC 2 cut(s) 804, 1044
Eco53kI GAGCTC 1 cut(s) 1177
Eco57I CTGAAG 4 cut(s) 382, 391, 489, 1059
Eco88I CYCGRG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 1177
EcoNI CCTNNNNNAGG 1 cut(s) 1167
EcoO109I RGGNCCY 1 cut(s) 1044
EcoO65I GGTNACC 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 7 cut(s) 470, 515, 520, 532, 605, 1034, 1393
EcoT14I CCWWGG 2 cut(s) 65, 970
EcoT38I GRGCYC 1 cut(s) 1179
ErhI CCWWGG 2 cut(s) 65, 970
FaeI CATG 3 cut(s) 200, 354, 869
FaqI GGGAC 3 cut(s) 94, 407, 1057
FatI CATG 3 cut(s) 196, 350, 865
FauNDI CATATG 1 cut(s) 1259
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 3 cut(s) 4, 433, 1255
FokI GGATG 2 cut(s) 137, 1422
FriOI GRGCYC 1 cut(s) 1179
Fsp4HI GCNGC 3 cut(s) 4, 433, 1255
FspBI CTAG 4 cut(s) 378, 720, 844, 990
GlaI GCGC 1 cut(s) 948
GluI GCNGC 3 cut(s) 4, 433, 1255
GsuI CTGGAG 4 cut(s) 904, 1105, 1116, 1161
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 5 cut(s) 190, 349, 520, 1159, 1278
HapII CCGG 1 cut(s) 751
HgaI GACGC 2 cut(s) 736, 1354
HhaI GCGC 1 cut(s) 949
Hin1I GRCGYC 2 cut(s) 1057, 1365
Hin1II CATG 3 cut(s) 200, 354, 869
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 8 cut(s) 174, 497, 525, 816, 824, 840, 1019, 1070
HpaII CCGG 1 cut(s) 751
HphI GGTGA 2 cut(s) 1119, 1184
Hpy166II GTNNAC 4 cut(s) 285, 564, 681, 852
Hpy188I TCNGA 6 cut(s) 131, 362, 410, 821, 898, 1078
Hpy188III TCNNGA 4 cut(s) 636, 737, 751, 1122
Hpy8I GTNNAC 4 cut(s) 285, 564, 681, 852
HpyAV CCTTC 7 cut(s) 201, 227, 234, 357, 708, 775, 1163
HpyCH4III ACNGT 4 cut(s) 306, 320, 630, 1201
HpyCH4IV ACGT 2 cut(s) 12, 1057
HpyCH4V TGCA 4 cut(s) 36, 263, 852, 1257
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 429, 888, 1371
HpyF3I CTNAG 6 cut(s) 20, 214, 440, 826, 1017, 1293
HpySE526I ACGT 2 cut(s) 12, 1057
Hsp92I GRCGYC 2 cut(s) 1057, 1365
Hsp92II CATG 3 cut(s) 200, 354, 869
HspAI GCGC 1 cut(s) 947
Kpn2I TCCGGA 1 cut(s) 750
Kzo9I GATC 4 cut(s) 99, 488, 602, 1385
LguI GCTCTTC 1 cut(s) 1240
LmnI GCTCC 3 cut(s) 243, 1182, 1396
Lsp1109I GCAGC 2 cut(s) 419, 1241
LweI GCATC 3 cut(s) 437, 869, 1319
MabI ACCWGGT 2 cut(s) 470, 532
MaeI CTAG 4 cut(s) 378, 720, 844, 990
MaeII ACGT 2 cut(s) 12, 1057
MaeIII GTNAC 4 cut(s) 300, 366, 536, 1366
MalI GATC 4 cut(s) 101, 490, 604, 1387
MbiI CCGCTC 1 cut(s) 689
MboI GATC 4 cut(s) 99, 488, 602, 1385
MboII GAAGA 8 cut(s) 169, 495, 704, 707, 948, 1065, 1257, 1311
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 3 cut(s) 99, 488, 602
MhlI GDGCHC 3 cut(s) 415, 854, 1179
MlsI TGGCCA 2 cut(s) 349, 1278
MluCI AATT 4 cut(s) 137, 277, 461, 754
MluNI TGGCCA 2 cut(s) 349, 1278
MlyI GAGTC 4 cut(s) 519, 818, 834, 1028
MmeI TCCRAC 1 cut(s) 1343
Mox20I TGGCCA 2 cut(s) 349, 1278
MroI TCCGGA 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 892
MscI TGGCCA 2 cut(s) 349, 1278
MseI TTAA 4 cut(s) 328, 780, 834, 952
Msp20I TGGCCA 2 cut(s) 349, 1278
MspA1I CMGCKG 1 cut(s) 1185
MspI CCGG 1 cut(s) 751
MspR9I CCNGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
MunI CAATTG 1 cut(s) 277
Mva1269I GAATGC 2 cut(s) 666, 1308
MvaI CCWGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
MwoI GCNNNNNNNGC 4 cut(s) 252, 429, 888, 1371
NdeI CATATG 1 cut(s) 1259
NdeII GATC 4 cut(s) 99, 488, 602, 1385
NlaIII CATG 3 cut(s) 200, 354, 869
NlaIV GGNNCC 3 cut(s) 613, 806, 1045
NmuCI GTSAC 1 cut(s) 1366
PceI AGGCCT 2 cut(s) 520, 1159
PciSI GCTCTTC 1 cut(s) 1240
PctI GAATGC 2 cut(s) 666, 1308
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 174, 497, 816, 1070
PfoI TCCNGGA 1 cut(s) 1393
PkrI GCNGC 3 cut(s) 5, 434, 1256
PleI GAGTC 4 cut(s) 519, 818, 834, 1027
PpsI GAGTC 4 cut(s) 519, 818, 834, 1027
PpuMI RGGWCCY 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 1044
Psp6I CCWGG 7 cut(s) 470, 515, 520, 532, 605, 1034, 1393
PspEI GGTNACC 1 cut(s) 536
PspGI CCWGG 7 cut(s) 470, 515, 520, 532, 605, 1034, 1393
PspN4I GGNNCC 3 cut(s) 613, 806, 1045
PspPI GGNCC 2 cut(s) 804, 1044
PspPPI RGGWCCY 1 cut(s) 1044
PsuI RGATCY 3 cut(s) 99, 488, 602
PvuII CAGCTG 1 cut(s) 1185
RsaI GTAC 4 cut(s) 46, 169, 476, 1027
RsaNI GTAC 4 cut(s) 45, 168, 475, 1026
SacI GAGCTC 1 cut(s) 1179
SapI GCTCTTC 1 cut(s) 1240
SaqAI TTAA 4 cut(s) 328, 780, 834, 952
SatI GCNGC 3 cut(s) 4, 433, 1255
Sau3AI GATC 4 cut(s) 99, 488, 602, 1385
Sau96I GGNCC 2 cut(s) 804, 1044
SchI GAGTC 4 cut(s) 519, 818, 834, 1028
ScrFI CCNGG 7 cut(s) 472, 517, 522, 534, 607, 1036, 1395
SduI GDGCHC 3 cut(s) 415, 854, 1179
SexAI ACCWGGT 2 cut(s) 470, 532
SfaNI GCATC 3 cut(s) 437, 869, 1319
SfcI CTRYAG 1 cut(s) 1164
SinI GGWCC 2 cut(s) 804, 1044
SmlI CTYRAG 1 cut(s) 1307
SmoI CTYRAG 1 cut(s) 1307
Sse9I AATT 4 cut(s) 137, 277, 461, 754
SseBI AGGCCT 2 cut(s) 520, 1159
SsiI CCGC 2 cut(s) 689, 999
SspMI CTAG 4 cut(s) 378, 720, 844, 990
SstI GAGCTC 1 cut(s) 1179
StuI AGGCCT 2 cut(s) 520, 1159
StyD4I CCNGG 7 cut(s) 470, 515, 520, 532, 605, 1034, 1393
StyI CCWWGG 2 cut(s) 65, 970
TaaI ACNGT 4 cut(s) 306, 320, 630, 1201
TaiI ACGT 2 cut(s) 15, 1060
TasI AATT 4 cut(s) 137, 277, 461, 754
TatI WGTACW 2 cut(s) 44, 1025
TfiI GAWTC 4 cut(s) 174, 497, 816, 1070
Tru1I TTAA 4 cut(s) 328, 780, 834, 952
Tru9I TTAA 4 cut(s) 328, 780, 834, 952
TscAI CASTG 4 cut(s) 311, 766, 970, 1204
TseFI GTSAC 1 cut(s) 1366
TseI GCWGC 3 cut(s) 3, 432, 1254
Tsp45I GTSAC 1 cut(s) 1366
TspDTI ATGAA 4 cut(s) 69, 169, 854, 1424
TspGWI ACGGA 1 cut(s) 411
TspRI CASTG 4 cut(s) 311, 766, 970, 1204
VneI GTGCAC 1 cut(s) 850
VpaK11BI GGWCC 2 cut(s) 804, 1044
XagI CCTNNNNNAGG 1 cut(s) 1167
XapI RAATTY 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 4 cut(s) 378, 720, 844, 990
ZraI GACGTC 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.