Rh6DG126600

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001132
Physical Location & Seq
Forward (+)
17840933 .. 17844471
3539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG126600.1

Sequence Viewer

Length: 594 bp
ATGAAGAGGGATTCTGAAATTGAAGAGACTAGGCTAGTGATATCCCCGACAGTGAAAGAGAGCAATGCTTCTAGTCTAGGAAATGGTGATGGTGGAAATGAAGGAATGATTGAAATAGGCGCTGAGTCGAGAGAGAGGAAGAAGAGTAGGTACTTGTCTTACCCATACGTAAACTGGGGGCAGAAAGGATTGTCTGCGGAAGGAATGGAAGCAACTACTGATGGTGGACCACCTTCAAATTTTAAAAGCACCGGTGAGAAATTCTGGAGGAAATGGCATAAGAGGTTTACTGGTGTGAATAACATATTTGGTAATTCAAATGTGAAAAATACATCTTCTGCTCAGTTGCTTTCTGAATTATGCTCTGCAGCCATTAGCTGCCAGTATCCGATTGAAAATAAAGCATTTGATTCAGTTGCTTGGTTAATCTCTAACTTCAGGATATCAGTATTTCATGACGAGCCCATTTGTGAAACCTACAGTAAGAACATGGCTGGTCAGGATGAGGATAAAGATGCCGAACCTTGCCTGTTGGAAAATGGTCGTCAGAATGAAGCTAAATCTGAGGTTGGAATTGCAGAGAAGGGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

197

Amino Acids

21.76

Weight (kDa)

5.25

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcsI RAATTY 2 cut(s) 238, 260
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 1 cut(s) 152
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 5 cut(s) 23, 113, 237, 318, 395
AluBI AGCT 2 cut(s) 378, 557
AluI AGCT 2 cut(s) 378, 557
Alw26I GTCTC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 368, 378
ApoI RAATTY 2 cut(s) 238, 260
AsiGI ACCGGT 1 cut(s) 251
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 98, 266
AvaII GGWCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 465
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbvI GCAGC 2 cut(s) 365, 380
BccI CCATC 2 cut(s) 83, 215
BciVI GTATCC 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 4 cut(s) 30, 35, 72, 77
BfmI CTRYAG 2 cut(s) 366, 478
BfoI RGCGCY 1 cut(s) 123
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 2 cut(s) 369, 379
BlsI GCNGC 2 cut(s) 370, 380
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 179, 295, 382
Bse3DI GCAATG 1 cut(s) 70
BseGI GGATG 1 cut(s) 508
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 3 cut(s) 114, 356, 555
BseNI ACTGG 3 cut(s) 179, 295, 382
BseXI GCAGC 2 cut(s) 365, 380
BshTI ACCGGT 1 cut(s) 251
BsiSI CCGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 465
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 3 cut(s) 115, 355, 556
BspHI TCATGA 1 cut(s) 454
BspMAI CTGCAG 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 3 cut(s) 179, 295, 382
BssAI RCCGGY 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 52, 482
Bst6I CTCTTC 2 cut(s) 18, 137
BstBAI YACGTR 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 123, 342, 564
BstF5I GGATG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 20
BstSFI CTRYAG 2 cut(s) 366, 478
BstSNI TACGTA 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 365, 380
BsuI GTATCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 57
CciI TCATGA 1 cut(s) 454
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 151
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 2 cut(s) 455, 490
CviJI RGCY 6 cut(s) 34, 371, 378, 463, 494, 557
CviKI_1 RGCY 6 cut(s) 34, 371, 378, 463, 494, 557
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 123, 342, 564
DraI TTTAAA 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 18, 137
EarI CTCTTC 2 cut(s) 18, 137
Eco105I TACGTA 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 465
Eco32I GATATC 2 cut(s) 42, 444
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 421
EcoRV GATATC 2 cut(s) 42, 444
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 2 cut(s) 458, 493
FaiI YATR 6 cut(s) 166, 279, 305, 361, 456, 491
FatI CATG 2 cut(s) 454, 489
Fnu4HI GCNGC 2 cut(s) 369, 379
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 2 cut(s) 369, 379
FspBI CTAG 4 cut(s) 30, 35, 72, 77
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 369, 379
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 458, 493
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 3 cut(s) 11, 125, 410
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 98, 266
Hpy166II GTNNAC 3 cut(s) 172, 227, 288
Hpy188I TCNGA 5 cut(s) 16, 355, 390, 549, 565
Hpy188III TCNNGA 5 cut(s) 129, 265, 439, 455, 500
Hpy8I GTNNAC 3 cut(s) 172, 227, 288
HpyAV CCTTC 4 cut(s) 95, 194, 243, 577
HpyCH4III ACNGT 2 cut(s) 52, 482
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 368, 578
HpyF3I CTNAG 3 cut(s) 123, 342, 564
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 458, 493
HspAI GCGC 1 cut(s) 120
LpnPI CCDG 9 cut(s) 160, 250, 265, 276, 395, 424, 480, 485, 542
Lsp1109I GCAGC 2 cut(s) 365, 380
LweI GCATC 1 cut(s) 505
MaeI CTAG 4 cut(s) 30, 35, 72, 77
MaeII ACGT 1 cut(s) 168
MboII GAAGA 5 cut(s) 16, 35, 151, 154, 327
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 6 cut(s) 18, 238, 260, 313, 356, 573
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 513, 550
MnlI CCTC 5 cut(s) 129, 261, 276, 499, 559
MseI TTAA 2 cut(s) 243, 425
MspI CCGG 1 cut(s) 252
NlaIII CATG 2 cut(s) 458, 493
PagI TCATGA 1 cut(s) 454
PfeI GAWTC 2 cut(s) 11, 410
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 2 cut(s) 370, 380
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 169
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 370
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 243, 425
SatI GCNGC 2 cut(s) 369, 379
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 134
SduI GDGCHC 1 cut(s) 465
SetI ASST 9 cut(s) 152, 171, 235, 287, 380, 479, 526, 559, 570
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 2 cut(s) 366, 478
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 169
Sse9I AATT 6 cut(s) 18, 238, 260, 313, 356, 573
SsiI CCGC 1 cut(s) 197
SspMI CTAG 4 cut(s) 30, 35, 72, 77
TaaI ACNGT 2 cut(s) 52, 482
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 128
TasI AATT 6 cut(s) 18, 238, 260, 313, 356, 573
TfiI GAWTC 2 cut(s) 11, 410
Tru1I TTAA 2 cut(s) 243, 425
Tru9I TTAA 2 cut(s) 243, 425
TscAI CASTG 1 cut(s) 57
TseI GCWGC 2 cut(s) 368, 378
TspDTI ATGAA 4 cut(s) 17, 114, 443, 567
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 2 cut(s) 238, 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XspI CTAG 4 cut(s) 30, 35, 72, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.