Rorug07G0217500

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001132
Physical Location & Seq
Forward (+)
19440315 .. 19444677
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0217500.1

Sequence Viewer

Length: 642 bp
ATGGGGTGCTTTACTTCTAAAGGGAAACGGCAGTTTCCAGGATACGAGGATCCTGTCTCCCTTGCTTCACAAACAGCATTTACTGTTAGTGAAGTTGAAGCACTCTTTGAGCTATATAAGAGTATCAGCAGTTCTGTGATTGATGATGGATTGATAAACAAGGAAGAGTTCCAGTTAGCCATTTTCAAGAATAGAAAGAAAGAAAATTTGTTTGCAAATCGGATATTTGATCTATTTGATGTGAAGAGGAAGGGTGTCATTGATTTCAATGACTTTGTTAGATCACTGACGGTCTTCCATCCCAATGCCCCACAAGAAGACAAGATCGATTTTTCATTTAAGCTCTATGACTTGGATAACACGGGCTTTATTGAGCGCCAAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAATCTGAAATGAAACTGGCAGATGACACCATCGAGTTAATTCTTGATAAGACTTTCATGGAAGCTGATGTGAACCAAGATGGGAAAATAGACTTTTCTGAGTGGAAAAATTTTGTTTCAAAGAATCCATCATTGTTAAAGATCATGACCCTCCCCTACCTTAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAGAGGTTGATGAGATTGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

213

Amino Acids

24.53

Weight (kDa)

4.68

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 106 - 176 3.2e-10 EF-hand domain pair
EF-hand_1 PF00036 153 - 179 3.5e-07 EF hand domain
EF-hand_5 PF13202 153 - 177 7.3e-08 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 44, 57
AcsI RAATTY 2 cut(s) 205, 523
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 4 cut(s) 98, 187, 268, 534
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 112, 343, 479
AluI AGCT 3 cut(s) 112, 343, 479
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 44, 57
ApoI RAATTY 2 cut(s) 205, 523
AspLEI GCGC 1 cut(s) 378
AxyI CCTNAGG 1 cut(s) 575
BamHI GGATCC 1 cut(s) 49
BbsI GAAGAC 2 cut(s) 286, 324
BccI CCATC 5 cut(s) 140, 306, 452, 488, 550
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 379
BfuI GTATCC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 286, 324
Bsa29I ATCGAT 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 2 cut(s) 172, 435
Bse21I CCTNAGG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 327
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 2 cut(s) 172, 435
BshVI ATCGAT 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 49, 229, 281, 324, 555
BspCNI CTCAG 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 327
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 44, 57
BsrI ACTGG 2 cut(s) 172, 435
BssMI GATC 5 cut(s) 49, 229, 281, 324, 555
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 85, 292
Bst6I CTCTTC 2 cut(s) 159, 239
BstDEI CTNAG 2 cut(s) 513, 575
BstENI CCTNNNNNAGG 1 cut(s) 574
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 5 cut(s) 52, 232, 284, 327, 558
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 5 cut(s) 49, 229, 281, 324, 555
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV2I GAAGAC 2 cut(s) 286, 324
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 575
BsuI GTATCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 558
CfoI GCGC 1 cut(s) 378
ClaI ATCGAT 1 cut(s) 327
CviAII CATG 3 cut(s) 472, 559, 639
CviJI RGCY 5 cut(s) 112, 179, 343, 366, 479
CviKI_1 RGCY 5 cut(s) 112, 179, 343, 366, 479
DdeI CTNAG 2 cut(s) 513, 575
DpnI GATC 5 cut(s) 51, 231, 283, 326, 557
DpnII GATC 5 cut(s) 49, 229, 281, 324, 555
Eam1104I CTCTTC 2 cut(s) 159, 239
EarI CTCTTC 2 cut(s) 159, 239
Eco81I CCTNAGG 1 cut(s) 575
EcoNI CCTNNNNNAGG 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 475, 562, 642
FaiI YATR 6 cut(s) 115, 117, 348, 473, 560, 640
FatI CATG 3 cut(s) 471, 558, 638
FokI GGATG 1 cut(s) 285
GlaI GCGC 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 379
HhaI GCGC 1 cut(s) 378
Hin1II CATG 3 cut(s) 475, 562, 642
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 2 cut(s) 416, 538
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 4 cut(s) 222, 421, 514, 619
Hpy188III TCNNGA 3 cut(s) 187, 458, 559
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 85, 292
HpyCH4V TGCA 2 cut(s) 215, 404
HpyF3I CTNAG 2 cut(s) 513, 575
Hsp92II CATG 3 cut(s) 475, 562, 642
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 5 cut(s) 49, 229, 281, 324, 555
LpnPI CCDG 5 cut(s) 24, 51, 66, 185, 416
MalI GATC 5 cut(s) 51, 231, 283, 326, 557
MboI GATC 5 cut(s) 49, 229, 281, 324, 555
MboII GAAGA 4 cut(s) 176, 256, 286, 329
MflI RGATCY 1 cut(s) 49
MluCI AATT 5 cut(s) 205, 399, 453, 523, 613
MnlI CCTC 5 cut(s) 40, 240, 376, 575, 613
MseI TTAA 5 cut(s) 339, 398, 452, 551, 612
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
NdeII GATC 5 cut(s) 49, 229, 281, 324, 555
NlaIII CATG 3 cut(s) 475, 562, 642
NlaIV GGNNCC 1 cut(s) 51
PagI TCATGA 1 cut(s) 558
PfeI GAWTC 2 cut(s) 416, 538
PfoI TCCNGGA 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PsuI RGATCY 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 5 cut(s) 339, 398, 452, 551, 612
Sau3AI GATC 5 cut(s) 49, 229, 281, 324, 555
ScrFI CCNGG 1 cut(s) 39
SetI ASST 6 cut(s) 114, 345, 387, 481, 576, 624
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 5 cut(s) 205, 399, 453, 523, 613
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 85, 292
TaqI TCGA 2 cut(s) 327, 447
TasI AATT 5 cut(s) 205, 399, 453, 523, 613
TfiI GAWTC 2 cut(s) 416, 538
Tru1I TTAA 5 cut(s) 339, 398, 452, 551, 612
Tru9I TTAA 5 cut(s) 339, 398, 452, 551, 612
TscAI CASTG 1 cut(s) 291
TspDTI ATGAA 3 cut(s) 324, 440, 460
TspRI CASTG 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 574
XapI RAATTY 2 cut(s) 205, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.