Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Forward (+)

22786227 .. 22786812

Gene Structure 586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAGAGGGATTCTGAAATTGAAGAGACTAGGCTAGTGATATCCCCGACAGTGAAAGAGAGCAATGCTTCTAGTCTAGGAAATGGTGATGGTGGAAATGAAGGAATGATTGAAATAGGCGCTGAGTCGAGAGAGAGGAAGAAGAGTAGGTACTTGTCTTACCCATACGTAAACTGGGGGCAGAAAGGATTGTCTGCGGAAGGAATGGAAGCAACTACTGATGGTGGACCACCTTCAAATTTTAAAAGCACCGGTGAGAAATTCTGGAGGAAATGGCATAAGAGGTTTACTGGTGTGAATAACATATTTGGATATCAGTATTTCATGACGAGCCCATTTGTGAAACCTACAGTAAGAACATGGCTGGTCAGGATGAGGATAAAGATGCCGAACCTTGCCTGTTGGAAAATGGTCGTCAGAATGAAGCTAAATCTGAGGTTGGAATTGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

151

Amino Acids

17.43

Weight (kDa)

10.0

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	238, 260
AfaI	GTAC	1 cut(s)	152
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	23, 113, 237
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	20
ApoI	RAATTY	2 cut(s)	238, 260
AsiGI	ACCGGT	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	98, 266
AvaII	GGWCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BccI	CCATC	2 cut(s)	83, 215
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	4 cut(s)	30, 35, 72, 77
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	179, 295
Bse3DI	GCAATG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	114, 425
BseNI	ACTGG	2 cut(s)	179, 295
BshTI	ACCGGT	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	335
BspACI	CCGC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	115, 426
BspHI	TCATGA	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	179, 295
BssAI	RCCGGY	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	52, 352
Bst6I	CTCTTC	2 cut(s)	18, 137
BstBAI	YACGTR	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	123, 434
BstF5I	GGATG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	348
BstSNI	TACGTA	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	2 cut(s)	325, 360
CviJI	RGCY	4 cut(s)	34, 333, 364, 427
CviKI_1	RGCY	4 cut(s)	34, 333, 364, 427
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	123, 434
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	18, 137
EarI	CTCTTC	2 cut(s)	18, 137
Eco105I	TACGTA	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	335
Eco32I	GATATC	2 cut(s)	42, 314
Eco47I	GGWCC	1 cut(s)	227
EcoRV	GATATC	2 cut(s)	42, 314
EcoT38I	GRGCYC	1 cut(s)	335
FaeI	CATG	2 cut(s)	328, 363
FaiI	YATR	5 cut(s)	166, 279, 305, 326, 361
FatI	CATG	2 cut(s)	324, 359
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	335
FspBI	CTAG	4 cut(s)	30, 35, 72, 77
GlaI	GCGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	328, 363
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	11, 125
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	98, 266
Hpy166II	GTNNAC	3 cut(s)	172, 227, 288
Hpy188I	TCNGA	3 cut(s)	16, 419, 435
Hpy188III	TCNNGA	4 cut(s)	129, 265, 325, 370
Hpy8I	GTNNAC	3 cut(s)	172, 227, 288
HpyAV	CCTTC	3 cut(s)	95, 194, 243
HpyCH4III	ACNGT	2 cut(s)	52, 352
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	448
HpyF3I	CTNAG	2 cut(s)	123, 434
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	328, 363
HspAI	GCGC	1 cut(s)	120
LpnPI	CCDG	7 cut(s)	160, 250, 265, 276, 350, 355, 412
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	4 cut(s)	30, 35, 72, 77
MaeII	ACGT	1 cut(s)	168
MboII	GAAGA	4 cut(s)	16, 35, 151, 154
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	4 cut(s)	18, 238, 260, 443
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	383, 420
MnlI	CCTC	6 cut(s)	129, 261, 276, 369, 429, 444
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	252
NlaIII	CATG	2 cut(s)	328, 363
PagI	TCATGA	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	251
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	9 cut(s)	152, 171, 235, 287, 349, 396, 429, 440, 455
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	348
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	169
Sse9I	AATT	4 cut(s)	18, 238, 260, 443
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	4 cut(s)	30, 35, 72, 77
TaaI	ACNGT	2 cut(s)	52, 352
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	18, 238, 260, 443
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	4 cut(s)	17, 114, 313, 437
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	238, 260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	4 cut(s)	30, 35, 72, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.