Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

27660705 .. 27661597

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32353.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATAATGATATACTTATTCGTATATTCATGACACTGAATGTTGTTGAGTTAGTCTGTGTGGCATCTGTTTGCAAATCTTGGCGGGAAGCAGCTTTCGAACCCTGCCTCTGGGAGGTAGTGGATTTTAGTAAGCTGAAGGCCACGAACTTCAATCCACAGCGGGAGCAGTCTAGCCACAGGGTTATTAACATCCTCAGTAGTGCTTTCCGTTTATGCGGTGGAACCATATCATGCTTGATTTTCCACCTCAACACATACATAACAAGTCAGCAGTTGGTTCTTGTTTCTAAAAGGTTAGTATTCACATTCTCCAAAAATGACACCGAAAGACTAGTTAATGGGTCTGAAGAAGCTGCAAAGAACTGGCCAAAGCTTGAGTCATTGACTATTCGAGGTAGATTTACTATTGAATTCATGAAGGCAATTGGTCAGCACTGCAACAACCTCATCGAGCTGAAAATGCTGTGCCTGGTTGACATGGATTGTGCAGAGAGCATTATTGCATATGCACCAAGTTTGAAGGTCTCAAGTATTGAGTTCAACATGGTGCACAGGGATGCTATGCTATCCTTGCTCAAGGAAATGAAGCAATTAGAAGAGTTGAGTATGTCTCACTGCCTCATTTTGGATCACTCTCCAATTCCTGGATACATGTCTGTGCTCGTCCAACTTGACGAGTTAGTCCTTCAAGAGGCTTCACGGCTAAAGAAATTTATGTTTTTTCAGAGCCCCAGCCATGTTCGCTCCTTTGAGATTAGTTTAGATGGAGATACTTTTTTGTTAATGGCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

266

Amino Acids

30.22

Weight (kDa)

5.99

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 38	7e-06	F-box domain
F-box-like	PF12937	3 - 43	3.8e-10	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	647
AciI	CCGC	3 cut(s)	85, 163, 219
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	413, 713
AcuI	CTGAAG	2 cut(s)	158, 369
AfiI	CCNNNNNNNGG	5 cut(s)	111, 115, 628, 647, 694
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	5 cut(s)	154, 413, 523, 544, 692
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	471, 646
AluBI	AGCT	5 cut(s)	95, 136, 356, 376, 457
AluI	AGCT	5 cut(s)	95, 136, 356, 376, 457
Alw21I	GWGCWC	2 cut(s)	555, 666
Alw26I	GTCTC	2 cut(s)	532, 618
Alw44I	GTGCAC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	2 cut(s)	141, 368
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	2 cut(s)	92, 356
ApoI	RAATTY	2 cut(s)	413, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AsuII	TTCGAA	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	734
Bbv12I	GWGCWC	2 cut(s)	555, 666
BbvI	GCAGC	2 cut(s)	104, 343
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	1 cut(s)	719
BciT130I	CCWGG	2 cut(s)	473, 648
BciVI	GTATCC	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	532, 618
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	174, 335
BfuI	GTATCC	1 cut(s)	644
BisI	GCNGC	2 cut(s)	93, 357
BlsI	GCNGC	2 cut(s)	94, 358
Bme1390I	CCNGG	2 cut(s)	473, 648
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	473, 648
BmsI	GCATC	2 cut(s)	74, 550
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
Bpu14I	TTCGAA	1 cut(s)	99
BpuEI	CTTGAG	3 cut(s)	398, 514, 563
BsaI	GGTCTC	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 115, 628, 647, 694
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	473, 648
BseGI	GGATG	2 cut(s)	192, 565
BseLI	CCNNNNNNNGG	5 cut(s)	111, 115, 628, 647, 694
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	104, 343
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	143, 370
BsiHKAI	GWGCWC	2 cut(s)	555, 666
BslI	CCNNNNNNNGG	5 cut(s)	111, 115, 628, 647, 694
BsmAI	GTCTC	2 cut(s)	532, 618
BsnI	GGCC	2 cut(s)	143, 370
Bso31I	GGTCTC	1 cut(s)	532
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	555, 666, 734
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	3 cut(s)	85, 163, 219
BspANI	GGCC	2 cut(s)	143, 370
BspCNI	CTCAG	1 cut(s)	210
BspHI	TCATGA	2 cut(s)	30, 417
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	99
BspTNI	GGTCTC	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	631
Bst2UI	CCWGG	2 cut(s)	473, 648
Bst6I	CTCTTC	1 cut(s)	594
BstBI	TTCGAA	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	197
BstENI	CCTNNNNNAGG	2 cut(s)	113, 692
BstF5I	GGATG	2 cut(s)	192, 565
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	2 cut(s)	532, 618
BstMBI	GATC	1 cut(s)	631
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 574, 744
BstNI	CCWGG	2 cut(s)	473, 648
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	471, 646
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	104, 343
BsuI	GTATCC	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	143, 370
BtsCI	GGATG	2 cut(s)	192, 565
BtsI	GCAGTG	2 cut(s)	436, 616
BtsIMutI	CAGTG	3 cut(s)	35, 436, 616
CciI	TCATGA	2 cut(s)	30, 417
CviAII	CATG	7 cut(s)	31, 234, 418, 481, 547, 655, 740
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	158, 369
EcoNI	CCTNNNNNAGG	2 cut(s)	113, 692
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	471, 646
EcoT38I	GRGCYC	1 cut(s)	734
FaeI	CATG	7 cut(s)	34, 237, 421, 484, 550, 658, 743
FatI	CATG	7 cut(s)	30, 233, 417, 480, 546, 654, 739
FauI	CCCGC	2 cut(s)	78, 156
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	93, 357
FokI	GGATG	2 cut(s)	179, 572
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	2 cut(s)	93, 357
FspBI	CTAG	2 cut(s)	174, 335
GluI	GCNGC	2 cut(s)	93, 357
GsaI	CCCAGC	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	143, 370
Hin1II	CATG	7 cut(s)	34, 237, 421, 484, 550, 658, 743
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	478, 553
Hpy188I	TCNGA	2 cut(s)	349, 729
Hpy188III	TCNNGA	3 cut(s)	31, 418, 692
Hpy8I	GTNNAC	2 cut(s)	478, 553
HpyAV	CCTTC	4 cut(s)	133, 415, 517, 698
HpyCH4V	TGCA	7 cut(s)	75, 359, 441, 491, 506, 512, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 574, 744
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	34, 237, 421, 484, 550, 658, 743
Kzo9I	GATC	1 cut(s)	631
LmnI	GCTCC	2 cut(s)	166, 752
Lsp1109I	GCAGC	2 cut(s)	104, 343
LweI	GCATC	2 cut(s)	74, 550
MaeI	CTAG	2 cut(s)	174, 335
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	2 cut(s)	362, 611
MfeI	CAATTG	1 cut(s)	426
MhlI	GDGCHC	3 cut(s)	555, 666, 734
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	5 cut(s)	413, 426, 593, 642, 713
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	8 cut(s)	109, 119, 206, 260, 389, 458, 632, 688
Mox20I	TGGCCA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	3 cut(s)	189, 339, 785
MslI	CAYNNNNRTG	2 cut(s)	558, 659
Msp20I	TGGCCA	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	473, 648
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	2 cut(s)	473, 648
MwoI	GCNNNNNNNGC	3 cut(s)	463, 574, 744
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	1 cut(s)	631
NlaIII	CATG	7 cut(s)	34, 237, 421, 484, 550, 658, 743
NlaIV	GGNNCC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	658
NspV	TTCGAA	1 cut(s)	99
PagI	TCATGA	2 cut(s)	30, 417
PciI	ACATGT	1 cut(s)	654
PflMI	CCANNNNNTGG	1 cut(s)	647
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	94, 358
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	471, 646
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	471, 646
PspN4I	GGNNCC	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	558, 659
SaqAI	TTAA	3 cut(s)	189, 339, 785
SatI	GCNGC	2 cut(s)	93, 357
Sau3AI	GATC	1 cut(s)	631
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	473, 648
SduI	GDGCHC	3 cut(s)	555, 666, 734
SfaNI	GCATC	2 cut(s)	74, 550
SfuI	TTCGAA	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	558, 659
SmlI	CTYRAG	3 cut(s)	377, 529, 578
SmoI	CTYRAG	3 cut(s)	377, 529, 578
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	5 cut(s)	413, 426, 593, 642, 713
SsiI	CCGC	3 cut(s)	85, 163, 219
SspMI	CTAG	2 cut(s)	174, 335
StyD4I	CCNGG	2 cut(s)	471, 646
TaqI	TCGA	3 cut(s)	99, 394, 453
TasI	AATT	5 cut(s)	413, 426, 593, 642, 713
Tru1I	TTAA	3 cut(s)	189, 339, 785
Tru9I	TTAA	3 cut(s)	189, 339, 785
TscAI	CASTG	3 cut(s)	42, 443, 623
TseI	GCWGC	2 cut(s)	92, 356
TspDTI	ATGAA	4 cut(s)	19, 406, 434, 602
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	42, 443, 623
Van91I	CCANNNNNTGG	1 cut(s)	647
VneI	GTGCAC	1 cut(s)	551
XagI	CCTNNNNNAGG	2 cut(s)	113, 692
XapI	RAATTY	2 cut(s)	413, 713
XceI	RCATGY	1 cut(s)	658
XspI	CTAG	2 cut(s)	174, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.