RLG00000003856

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004535
Physical Location & Seq
Reverse (-)
53572262 .. 53573050
789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003856

Sequence Viewer

Length: 693 bp
ATGACGACAAACAAAAACTCAAGATTTGACAGATGGGCAGACCTGGATAAAGATATACTTGTAGGTATATTCATGACACTGAATGTTGTGGAATTAATCCGTGGGGCATCTGTTTGCAAATCTTGGCGGGAAGCAGCTTCGGAACCCTGCCTTTGGAAGACAGTTGACTTAAGTAAGCTGGAGGCCAAGAACTTTAATCGACAGCATGAGCAGTCTAGCCAGAGGGTTATGGATATTGTGAATAGTGCTTTCAGTTTAAGTGGTGGAACTATATCTTGCTTTATTTTCCACTTCTATGCATACATAACAAGTCAGCACTTGGTTTGTATTTCTGAAAGACTTGTTCTACCAGTTCGGGACAACGATATACTAGTTAATGAGTTTGAAGAAGCTGCAAAGAACTGGCCACTGCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTGATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGCAAGCTGAAAATGATGCGCCGGTTTGACACGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGGTCATAAGTCTTCAGTGCAACAGAGTGCGCAGGGATGCTATACTTTTCGTGCTCAAGGAATTGAGTCAGTTAGAACTTGGAAGTGTTGAATATAACTCACTGCCTCATTCTGGATCACTTTCCAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

231

Amino Acids

26.11

Weight (kDa)

8.14

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 9.8e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 590
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 557
AfiI CCNNNNNNNGG 2 cut(s) 153, 671
AflII CTTAAG 1 cut(s) 169
AgsI TTSAA 4 cut(s) 386, 449, 559, 650
AhlI ACTAGT 1 cut(s) 370
AjnI CCWGG 2 cut(s) 42, 430
AluBI AGCT 5 cut(s) 137, 178, 392, 438, 493
AluI AGCT 5 cut(s) 137, 178, 392, 438, 493
Alw21I GWGCWC 1 cut(s) 615
AlwI GGATC 1 cut(s) 682
AoxI GGCC 2 cut(s) 183, 404
ApeKI GCWGC 2 cut(s) 134, 392
AseI ATTAAT 1 cut(s) 95
AspLEI GCGC 2 cut(s) 507, 591
BalI TGGCCA 1 cut(s) 406
BbsI GAAGAC 2 cut(s) 164, 563
Bbv12I GWGCWC 1 cut(s) 615
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 146, 379
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 44, 432
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 2 cut(s) 216, 371
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 135, 393
BlsI GCNGC 2 cut(s) 136, 394
Bme1390I CCNGG 2 cut(s) 44, 432
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 44, 432
BmsI GCATC 3 cut(s) 116, 492, 586
BpiI GAAGAC 2 cut(s) 164, 563
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 485
BpuEI CTTGAG 3 cut(s) 4, 434, 599
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 671
Bse118I RCCGGY 1 cut(s) 507
Bse1I ACTGG 2 cut(s) 350, 407
BseBI CCWGG 2 cut(s) 44, 432
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 153, 671
BseMII CTCAG 1 cut(s) 499
BseNI ACTGG 2 cut(s) 350, 407
BseXI GCAGC 2 cut(s) 146, 379
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 2 cut(s) 185, 406
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 153, 671
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 2 cut(s) 185, 406
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 1 cut(s) 674
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 185, 406
BspCNI CTCAG 1 cut(s) 498
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 682
BspTI CTTAAG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 507
BsrI ACTGG 2 cut(s) 350, 407
BssAI RCCGGY 1 cut(s) 507
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 674
Bst2UI CCWGG 2 cut(s) 44, 432
Bst4CI ACNGT 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 601
BstHHI GCGC 2 cut(s) 507, 591
BstKTI GATC 1 cut(s) 677
BstMBI GATC 1 cut(s) 674
BstNI CCWGG 2 cut(s) 44, 432
BstSCI CCNGG 2 cut(s) 42, 430
BstV1I GCAGC 2 cut(s) 146, 379
BstV2I GAAGAC 2 cut(s) 164, 563
BsuRI GGCC 2 cut(s) 185, 406
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 3 cut(s) 407, 472, 659
BtsIMutI CAGTG 5 cut(s) 77, 407, 472, 581, 659
Cac8I GCNNGC 1 cut(s) 491
CciI TCATGA 1 cut(s) 72
CfoI GCGC 2 cut(s) 507, 591
Cfr10I RCCGGY 1 cut(s) 507
CviAII CATG 2 cut(s) 73, 206
CviJI RGCY 8 cut(s) 137, 178, 185, 219, 392, 406, 438, 493
CviKI_1 RGCY 8 cut(s) 137, 178, 185, 219, 392, 406, 438, 493
DdeI CTNAG 1 cut(s) 485
DpnI GATC 1 cut(s) 676
DpnII GATC 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 42, 430
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 2 cut(s) 76, 209
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 72, 205
FauI CCCGC 1 cut(s) 120
FauNDI CATATG 1 cut(s) 544
Fnu4HI GCNGC 2 cut(s) 135, 393
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 2 cut(s) 135, 393
FspBI CTAG 2 cut(s) 216, 371
FspI TGCGCA 1 cut(s) 590
GlaI GCGC 2 cut(s) 506, 590
GluI GCNGC 2 cut(s) 135, 393
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 2 cut(s) 185, 406
HapII CCGG 1 cut(s) 508
HhaI GCGC 2 cut(s) 507, 591
Hin1II CATG 2 cut(s) 76, 209
Hin6I GCGC 2 cut(s) 505, 589
HinP1I GCGC 2 cut(s) 505, 589
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 2 cut(s) 416, 625
HpaII CCGG 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 142, 334
Hpy188III TCNNGA 4 cut(s) 21, 73, 356, 672
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 451, 553
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 8 cut(s) 117, 299, 395, 477, 527, 542, 548, 579
HpyF3I CTNAG 1 cut(s) 485
Hsp92II CATG 2 cut(s) 76, 209
HspAI GCGC 2 cut(s) 505, 589
Kzo9I GATC 1 cut(s) 674
Lsp1109I GCAGC 2 cut(s) 146, 379
LweI GCATC 3 cut(s) 116, 492, 586
MaeI CTAG 2 cut(s) 216, 371
MalI GATC 1 cut(s) 676
MboI GATC 1 cut(s) 674
MboII GAAGA 3 cut(s) 169, 398, 563
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 615
MlsI TGGCCA 1 cut(s) 406
MluCI AATT 4 cut(s) 92, 462, 520, 620
MluNI TGGCCA 1 cut(s) 406
MlyI GAGTC 2 cut(s) 425, 634
MnlI CCTC 4 cut(s) 175, 216, 494, 675
Mox20I TGGCCA 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 1 cut(s) 406
MseI TTAA 5 cut(s) 95, 170, 195, 257, 375
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 406
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 2 cut(s) 44, 432
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 2 cut(s) 44, 432
NdeI CATATG 1 cut(s) 544
NdeII GATC 1 cut(s) 674
NlaIII CATG 2 cut(s) 76, 209
NlaIV GGNNCC 1 cut(s) 144
NsbI TGCGCA 1 cut(s) 590
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 1 cut(s) 72
PkrI GCNGC 2 cut(s) 136, 394
PleI GAGTC 2 cut(s) 424, 633
PpsI GAGTC 2 cut(s) 424, 633
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 42, 430
PspGI CCWGG 2 cut(s) 42, 430
PspN4I GGNNCC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 5 cut(s) 95, 170, 195, 257, 375
SatI GCNGC 2 cut(s) 135, 393
Sau3AI GATC 1 cut(s) 674
SchI GAGTC 2 cut(s) 425, 634
ScrFI CCNGG 2 cut(s) 44, 432
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 3 cut(s) 116, 492, 586
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 4 cut(s) 19, 169, 413, 614
SmoI CTYRAG 4 cut(s) 19, 169, 413, 614
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 4 cut(s) 92, 462, 520, 620
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 216, 371
StyD4I CCNGG 2 cut(s) 42, 430
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 199
TasI AATT 4 cut(s) 92, 462, 520, 620
Tru1I TTAA 5 cut(s) 95, 170, 195, 257, 375
Tru9I TTAA 5 cut(s) 95, 170, 195, 257, 375
TscAI CASTG 5 cut(s) 84, 414, 479, 581, 666
TseI GCWGC 2 cut(s) 134, 392
TspDTI ATGAA 2 cut(s) 61, 470
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 5 cut(s) 84, 414, 479, 581, 666
Vha464I CTTAAG 1 cut(s) 169
VspI ATTAAT 1 cut(s) 95
XspI CTAG 2 cut(s) 216, 371
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.