Rh7BG175800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004535
Physical Location & Seq
Forward (+)
13769797 .. 13771598
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG175800.1

Sequence Viewer

Length: 684 bp
ATGGAACAAGGCATACTGCTCAAGATCTTCATGGCTCGTGATATGGAACAAGGCATACTGCTCAAGATCTTCATGGCTCTAAATGTCATGGATTTGGTTGGCAGTGTTTCTGCTGTCTGTAGCACATGGCATTCAGTTTGTCGTGAACCCTGCATGTGGGAGACCCTAAATATGAGTGTGCTGGTTCCGAAACTCTTTCTTACTCCTCAAGAAGCACATAATTTCTGTGATGAGGAGCACAGAAACAAAGTTACGAGATTCTTGAATACAGCATTAAACCTTAGCCGTGGAAAGATATCTTGCCTGATTTTCAATTACTACATCCCTATAACAGATGAGCAGTTGATCCATGCTTCTGAGAGAACCTCGAAACTGAAAAGACTTGTTCTCCCACCACGGAATCTCTTAACACCGGCTGGATTTGAAGACTCTATAAAGAATTGGGCACAACTAGAGTCAATGACTATGCCACTTTGTTTCTTTGAGTTTGAAATGGTGAAGTTGATCGGTGCTCATTGCAAGAATTTCTCTGAACTCAAACTTATGTGCCCTTTTGTGGTGGACTTTGGCAAGACCATTGCTGCCTATATCCTGAACTTAAGGGTTTTAAGTCTTCAGGGCAGCTTGGTTGAGAAGGAAGCCTTGGTTTACATACTGAACAACATGAAAAATTTGGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

227

Amino Acids

26.0

Weight (kDa)

6.94

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 57 5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 2 cut(s) 523, 670
AcuI CTGAAG 1 cut(s) 599
AfiI CCNNNNNNNGG 2 cut(s) 156, 556
AflII CTTAAG 1 cut(s) 598
AgsI TTSAA 4 cut(s) 265, 313, 425, 491
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 1 cut(s) 624
AluI AGCT 1 cut(s) 624
Alw21I GWGCWC 2 cut(s) 240, 514
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 581, 621
ApoI RAATTY 2 cut(s) 523, 670
AsuHPI GGTGA 1 cut(s) 508
BaeGI GKGCMC 2 cut(s) 448, 551
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 2 cut(s) 432, 605
Bbv12I GWGCWC 2 cut(s) 240, 514
BbvI GCAGC 2 cut(s) 568, 633
BceAI ACGGC 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 598
BglII AGATCT 2 cut(s) 24, 66
BisI GCNGC 2 cut(s) 582, 622
BlsI GCNGC 2 cut(s) 583, 623
BmiI GGNNCC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 432, 605
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu10I CCTNAGC 1 cut(s) 281
BpuEI CTTGAG 3 cut(s) 5, 47, 192
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 286, 395, 642
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 556
Bse118I RCCGGY 1 cut(s) 412
Bse3DI GCAATG 2 cut(s) 514, 576
BseDI CCNNGG 3 cut(s) 286, 395, 642
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 156, 556
BseMI GCAATG 2 cut(s) 514, 576
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 195, 248
BseSI GKGCMC 2 cut(s) 448, 551
BseXI GCAGC 2 cut(s) 568, 633
BsiHKAI GWGCWC 2 cut(s) 240, 514
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 156, 556
BsmAI GTCTC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 130
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 4 cut(s) 240, 448, 514, 551
Bsp143I GATC 4 cut(s) 24, 66, 345, 504
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 340
BspTI CTTAAG 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 514, 576
BsrFI RCCGGY 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 3 cut(s) 286, 395, 642
BssMI GATC 4 cut(s) 24, 66, 345, 504
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 36
BstAFI CTTAAG 1 cut(s) 598
BstDEI CTNAG 2 cut(s) 281, 357
BstDSI CCRYGG 2 cut(s) 286, 395
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 4 cut(s) 27, 69, 348, 507
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 4 cut(s) 24, 66, 345, 504
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 2 cut(s) 448, 551
BstV1I GCAGC 2 cut(s) 568, 633
BstV2I GAAGAC 2 cut(s) 432, 605
BstX2I RGATCY 2 cut(s) 24, 66
BstYI RGATCY 2 cut(s) 24, 66
BtgI CCRYGG 2 cut(s) 286, 395
BtsCI GGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 412
CviAII CATG 7 cut(s) 31, 73, 88, 126, 154, 350, 664
CviJI RGCY 6 cut(s) 35, 77, 285, 416, 624, 641
CviKI_1 RGCY 6 cut(s) 35, 77, 285, 416, 624, 641
DdeI CTNAG 2 cut(s) 281, 357
DpnI GATC 4 cut(s) 26, 68, 347, 506
DpnII GATC 4 cut(s) 24, 66, 345, 504
Eco130I CCWWGG 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 599
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 7 cut(s) 34, 76, 91, 129, 157, 353, 667
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FatI CATG 7 cut(s) 30, 72, 87, 125, 153, 349, 663
Fnu4HI GCNGC 2 cut(s) 582, 622
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 582, 622
FspBI CTAG 1 cut(s) 452
GluI GCNGC 2 cut(s) 582, 622
HapII CCGG 1 cut(s) 413
Hin1II CATG 7 cut(s) 34, 76, 91, 129, 157, 353, 667
HinfI GANTC 4 cut(s) 258, 400, 428, 455
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 3 cut(s) 146, 562, 649
Hpy188I TCNGA 3 cut(s) 189, 358, 532
Hpy188III TCNNGA 7 cut(s) 22, 38, 64, 143, 209, 262, 592
Hpy8I GTNNAC 3 cut(s) 146, 562, 649
HpyAV CCTTC 1 cut(s) 628
HpyCH4V TGCA 2 cut(s) 153, 519
HpyF3I CTNAG 2 cut(s) 281, 357
Hsp92II CATG 7 cut(s) 34, 76, 91, 129, 157, 353, 667
Kzo9I GATC 4 cut(s) 24, 66, 345, 504
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 7 cut(s) 163, 167, 317, 402, 426, 602, 605
Lsp1109I GCAGC 2 cut(s) 568, 633
MaeI CTAG 1 cut(s) 452
MaeIII GTNAC 1 cut(s) 250
MalI GATC 4 cut(s) 26, 68, 347, 506
MboI GATC 4 cut(s) 24, 66, 345, 504
MboII GAAGA 4 cut(s) 19, 61, 437, 605
MflI RGATCY 2 cut(s) 24, 66
MhlI GDGCHC 4 cut(s) 240, 448, 514, 551
MluCI AATT 5 cut(s) 220, 313, 439, 523, 670
MlyI GAGTC 2 cut(s) 422, 464
MnlI CCTC 3 cut(s) 216, 226, 376
MseI TTAA 4 cut(s) 275, 407, 599, 608
MspCI CTTAAG 1 cut(s) 598
MspI CCGG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 130
NdeII GATC 4 cut(s) 24, 66, 345, 504
NlaIII CATG 7 cut(s) 34, 76, 91, 129, 157, 353, 667
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 1 cut(s) 157
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 258, 400
PkrI GCNGC 2 cut(s) 583, 623
PleI GAGTC 2 cut(s) 422, 463
PpsI GAGTC 2 cut(s) 422, 463
PspN4I GGNNCC 1 cut(s) 186
PsrI GAACNNNNNNTAC 3 cut(s) 29, 39, 71
PsuI RGATCY 2 cut(s) 24, 66
SaqAI TTAA 4 cut(s) 275, 407, 599, 608
SatI GCNGC 2 cut(s) 582, 622
Sau3AI GATC 4 cut(s) 24, 66, 345, 504
SchI GAGTC 2 cut(s) 422, 464
SduI GDGCHC 4 cut(s) 240, 448, 514, 551
SetI ASST 3 cut(s) 282, 368, 626
SfcI CTRYAG 1 cut(s) 118
SmlI CTYRAG 4 cut(s) 20, 62, 207, 598
SmoI CTYRAG 4 cut(s) 20, 62, 207, 598
Sse9I AATT 5 cut(s) 220, 313, 439, 523, 670
SspMI CTAG 1 cut(s) 452
StyI CCWWGG 1 cut(s) 642
TaqI TCGA 1 cut(s) 368
TasI AATT 5 cut(s) 220, 313, 439, 523, 670
TfiI GAWTC 2 cut(s) 258, 400
Tru1I TTAA 4 cut(s) 275, 407, 599, 608
Tru9I TTAA 4 cut(s) 275, 407, 599, 608
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 581, 621
TspDTI ATGAA 3 cut(s) 19, 61, 680
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 598
XapI RAATTY 2 cut(s) 523, 670
XceI RCATGY 1 cut(s) 157
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.