Rh7CG181600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004535
Physical Location & Seq
Forward (+)
15741002 .. 15741687
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG181600.1

Sequence Viewer

Length: 606 bp
ATGACGACAAACAAAAACTCAAGATTTGACAGATGGGCAGACCTGGATAAAGATGTACTTGTAGGTATATTCATGACACTGAATGTTGTGCAATTAATCCGTGGGGCATCTGTTTGCAAATCTTGGCTGGAAGCAGCTTCGGAACCTTGCCTTTGGAAGACAGTTGACTTAAGTAAGCTGGAGGTCAAGAACTTTAACCAACAGCGTGAGCAGTCTAGCCAGAGGGTTATGGATATTGTGAATAGTGCTTTCAGTTTAAGTGGTGGAACTATATCTTGCTTTATTTTCCACTTCTATGCATACATAACAAGTCAGCACTTGGTTTGTATTTCTGAAAGCACCCCGAATCTCAAAAGACTTGTTCTACCAGTTCGGGACAACGATATACTAGTCAATGAGTTTGAAGAAGCTGCAAAGAATTGGCCACTTCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTCATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGCGAGCTGAAAATGATGCACCGGTTTGACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTCGATCTGAAGGTCATAAGTCTTCGGTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

201

Amino Acids

22.79

Weight (kDa)

6.52

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 2.6e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 1 cut(s) 57
AflII CTTAAG 1 cut(s) 169
AgeI ACCGGT 1 cut(s) 525
AgsI TTSAA 2 cut(s) 404, 467
AhlI ACTAGT 1 cut(s) 388
AjnI CCWGG 2 cut(s) 42, 448
AluBI AGCT 5 cut(s) 137, 178, 410, 456, 511
AluI AGCT 5 cut(s) 137, 178, 410, 456, 511
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 134, 410
AseI ATTAAT 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 525
BalI TGGCCA 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 164, 585
BbvCI CCTCAGC 1 cut(s) 503
BbvI GCAGC 2 cut(s) 146, 397
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 44, 450
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 2 cut(s) 216, 389
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 135, 411
BlsI GCNGC 2 cut(s) 136, 412
Bme1390I CCNGG 2 cut(s) 44, 450
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 44, 450
BmsI GCATC 2 cut(s) 116, 510
BpiI GAAGAC 2 cut(s) 164, 585
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 4, 452
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 525
Bse118I RCCGGY 1 cut(s) 525
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 44, 450
BseDI CCNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 517
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 146, 397
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 1 cut(s) 424
BshTI ACCGGT 1 cut(s) 525
BsiSI CCGG 1 cut(s) 526
BslFI GGGAC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 575
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 1 cut(s) 516
BspHI TCATGA 2 cut(s) 72, 471
BspLI GGNNCC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 525
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 525
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 575
Bst2UI CCWGG 2 cut(s) 44, 450
Bst4CI ACNGT 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 1 cut(s) 578
BstMBI GATC 1 cut(s) 575
BstNI CCWGG 2 cut(s) 44, 450
BstSCI CCNGG 2 cut(s) 42, 448
BstV1I GCAGC 2 cut(s) 146, 397
BstV2I GAAGAC 2 cut(s) 164, 585
BsuRI GGCC 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 77, 490
Cac8I GCNNGC 1 cut(s) 509
CciI TCATGA 2 cut(s) 72, 471
Cfr10I RCCGGY 1 cut(s) 525
Csp6I GTAC 1 cut(s) 56
CspAI ACCGGT 1 cut(s) 525
CviAII CATG 3 cut(s) 73, 472, 535
CviJI RGCY 8 cut(s) 127, 137, 178, 219, 410, 424, 456, 511
CviKI_1 RGCY 8 cut(s) 127, 137, 178, 219, 410, 424, 456, 511
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 503
DpnI GATC 1 cut(s) 577
DpnII GATC 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 600
EcoRII CCWGG 2 cut(s) 42, 448
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 3 cut(s) 76, 475, 538
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 389
FatI CATG 3 cut(s) 72, 471, 534
FauNDI CATATG 1 cut(s) 562
Fnu4HI GCNGC 2 cut(s) 135, 411
Fsp4HI GCNGC 2 cut(s) 135, 411
FspBI CTAG 2 cut(s) 216, 389
GluI GCNGC 2 cut(s) 135, 411
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 526
Hin1II CATG 3 cut(s) 76, 475, 538
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 2 cut(s) 346, 434
HpaII CCGG 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 142, 334, 580
Hpy188III TCNNGA 6 cut(s) 21, 73, 187, 374, 431, 472
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 469, 575
HpyCH4III ACNGT 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 503
Hsp92II CATG 3 cut(s) 76, 475, 538
Kzo9I GATC 1 cut(s) 575
LpnPI CCDG 9 cut(s) 29, 56, 113, 164, 233, 381, 435, 462, 539
Lsp1109I GCAGC 2 cut(s) 146, 397
LweI GCATC 2 cut(s) 116, 510
MaeI CTAG 2 cut(s) 216, 389
MalI GATC 1 cut(s) 577
MboI GATC 1 cut(s) 575
MboII GAAGA 3 cut(s) 169, 416, 585
MfeI CAATTG 1 cut(s) 480
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 4 cut(s) 92, 418, 480, 538
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 1 cut(s) 443
MnlI CCTC 3 cut(s) 175, 216, 512
Mox20I TGGCCA 1 cut(s) 424
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 1 cut(s) 424
MseI TTAA 4 cut(s) 95, 170, 195, 257
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 424
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 2 cut(s) 44, 450
MunI CAATTG 1 cut(s) 480
MvaI CCWGG 2 cut(s) 44, 450
NdeI CATATG 1 cut(s) 562
NdeII GATC 1 cut(s) 575
NlaIII CATG 3 cut(s) 76, 475, 538
NlaIV GGNNCC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 2 cut(s) 72, 471
PfeI GAWTC 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 525
PkrI GCNGC 2 cut(s) 136, 412
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 42, 448
PspGI CCWGG 2 cut(s) 42, 448
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 95, 170, 195, 257
SatI GCNGC 2 cut(s) 135, 411
Sau3AI GATC 1 cut(s) 575
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 44, 450
SfaNI GCATC 2 cut(s) 116, 510
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 19, 169, 431
SmoI CTYRAG 3 cut(s) 19, 169, 431
SpeI ACTAGT 1 cut(s) 388
Sse9I AATT 4 cut(s) 92, 418, 480, 538
SspMI CTAG 2 cut(s) 216, 389
StyD4I CCNGG 2 cut(s) 42, 448
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 574
TasI AATT 4 cut(s) 92, 418, 480, 538
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 95, 170, 195, 257
Tru9I TTAA 4 cut(s) 95, 170, 195, 257
TscAI CASTG 2 cut(s) 84, 497
TseI GCWGC 2 cut(s) 134, 410
TspDTI ATGAA 3 cut(s) 61, 488, 551
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 84, 497
Vha464I CTTAAG 1 cut(s) 169
VspI ATTAAT 1 cut(s) 95
XspI CTAG 2 cut(s) 216, 389
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.