Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

22665261 .. 22670780

Gene Structure 5520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGGCAATTGGTCAGCAATGCAAGAACCTCAACAAGCTAAAAATGTTGCGTCAGTTTGACATGGATTGTGTAGAGAACAATCTTGCACATGCACCAAGTTTGAATGTCTCAAGTCTTCGGTGCAACATGATGCACATGGATGCTATAGTTTGCTTGCTCAAGGAAATGAGGCTCACTGCCTCATTTCGGATCACTCTCCAATTCTTGGATTTATGTATGTGCTCTCCAAACTTGATTCAAGGATGTGGGACCAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTTCGAAGATCACAATTAGAGCTCGGTCGACGGCGGAGGTGAAATCGCTTTGGTCGAGAGCAGCGGAGGCGCTCATCTACTTTACTGTATTTGGTAAAAGTCCTATATATTTCGATTCTCTTGGTTGGAATTTGAGTTCACGGTCGATTAAGAGGCAACTCTTTGACCGGAGCACTTGTCCCCGATATGTGTCAATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

162

Amino Acids

18.39

Weight (kDa)

9.56

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	2 cut(s)	320, 350
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	189, 208
AgsI	TTSAA	2 cut(s)	106, 242
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	2 cut(s)	40, 308
AluI	AGCT	2 cut(s)	40, 308
Alw21I	GWGCWC	3 cut(s)	227, 310, 461
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	252
BanII	GRGCYC	2 cut(s)	276, 310
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	3 cut(s)	227, 310, 461
BbvI	GCAGC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	2 cut(s)	123, 133
BpiI	GAAGAC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	97, 146
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 208
Bse3DI	GCAATG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	148, 251
BseLI	CCNNNNNNNGG	2 cut(s)	189, 208
BseMI	GCAATG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	2 cut(s)	314, 431
BsiEI	CGRYCG	2 cut(s)	314, 431
BsiHKAI	GWGCWC	3 cut(s)	227, 310, 461
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	2 cut(s)	265, 450
BslI	CCNNNNNNNGG	2 cut(s)	189, 208
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	265, 450
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	4 cut(s)	227, 276, 310, 461
Bsp143I	GATC	2 cut(s)	192, 294
BspACI	CCGC	2 cut(s)	320, 350
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	26
BssMI	GATC	2 cut(s)	192, 294
Bst4CI	ACNGT	2 cut(s)	373, 429
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	148, 251
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	195, 297
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	192, 294
BstMCI	CGRYCG	2 cut(s)	314, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	148, 251
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	41
CviAII	CATG	4 cut(s)	64, 92, 130, 139
CviJI	RGCY	4 cut(s)	40, 175, 274, 308
CviKI_1	RGCY	4 cut(s)	40, 175, 274, 308
DpnI	GATC	2 cut(s)	194, 296
DpnII	GATC	2 cut(s)	192, 294
EciI	GGCGGA	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	308
Eco24I	GRGCYC	2 cut(s)	276, 310
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoT38I	GRGCYC	2 cut(s)	276, 310
FaeI	CATG	4 cut(s)	67, 95, 133, 142
FaqI	GGGAC	2 cut(s)	265, 450
FatI	CATG	4 cut(s)	63, 91, 129, 138
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	155, 258
FriOI	GRGCYC	2 cut(s)	276, 310
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	487
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	359
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	4 cut(s)	67, 95, 133, 142
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	238, 401
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	315, 425
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	2 cut(s)	315, 425
Hpy99I	CGWCG	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	373, 429
HpyCH4V	TGCA	5 cut(s)	24, 89, 95, 126, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
Hsp92II	CATG	4 cut(s)	67, 95, 133, 142
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	192, 294
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	1 cut(s)	467
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	2 cut(s)	123, 133
MaeI	CTAG	1 cut(s)	487
MalI	GATC	2 cut(s)	194, 296
MboI	GATC	2 cut(s)	192, 294
MboII	GAAGA	2 cut(s)	110, 304
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	4 cut(s)	227, 276, 310, 461
MluCI	AATT	5 cut(s)	9, 203, 300, 415, 480
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	9 cut(s)	41, 165, 193, 252, 256, 277, 316, 346, 432
MseI	TTAA	2 cut(s)	435, 483
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	454
MunI	CAATTG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	2 cut(s)	192, 294
NlaIII	CATG	4 cut(s)	67, 95, 133, 142
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	238, 401
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	435, 483
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	2 cut(s)	192, 294
Sau96I	GGNCC	1 cut(s)	252
SduI	GDGCHC	4 cut(s)	227, 276, 310, 461
SetI	ASST	5 cut(s)	33, 42, 267, 310, 327
SfaNI	GCATC	2 cut(s)	123, 133
SfcI	CTRYAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	112, 161
SmoI	CTYRAG	2 cut(s)	112, 161
Sse9I	AATT	5 cut(s)	9, 203, 300, 415, 480
SsiI	CCGC	2 cut(s)	320, 350
SspMI	CTAG	1 cut(s)	487
SstI	GAGCTC	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	373, 429
TaqI	TCGA	5 cut(s)	290, 314, 341, 399, 431
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	5 cut(s)	9, 203, 300, 415, 480
TfiI	GAWTC	2 cut(s)	238, 401
Tru1I	TTAA	2 cut(s)	435, 483
Tru9I	TTAA	2 cut(s)	435, 483
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	184
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.