Rroxscaffold_1G00021280

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004535
Physical Location & Seq
Forward (+)
26109496 .. 26111882
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021280.1

Sequence Viewer

Length: 792 bp
ATGAGCCATTTTCCTGCGACGTTGTCCTCTTGTGCGGAGATGGTGAGAATTTACTCCGGCTCATCTCCGTTCGGGTCCGCTTCGACCGAGAAAGGTAATGAAGATGGAATCGGCGACGAATCGGCGATGGCGTTGAGGAAGGGTGCTGCGGAGCCAAGCGAGATGGTGAGGAAGGGAGTTGCGGGAGCCGAGAAAGATGGGCTCACTAAAGTGAGTCTTGAAGATCTCGTCGTTCCCATTCTAGAAAGGCTCATTCTCGTCCTACATCACAAAAACTCAAGATTTGATAGATGGGCAGACCTGGATAAAGATATACTTGTACGTATATTCATGACACTGAATGTTGTGGAATTAATCTGTGGGGCATCTGTTTGCAAATCTTGGCGGGAAGCAGCTTCGGAACCCTACCTCTGGGAGATAGTTGACTTAAGTAAGCTGGAGGCCAAGAACTTCAATCGAGAGCTCGGGCAGTCTAACCAGAGGGTTATGGATATTGTGAATAGTGTTTTCAGTTTAAGTGGTGGAACTATATTTTGCTTGACTTTCCACATCTACGCATACATAACAAGTCAGCACTTGGTTTGTATTTCTGAAAGAACCCGGAATCTCAAAAGACTTGTTCTACCAGTTTGGGACAACAATATACTAGTTAATGACTTTGAAGAAGCAGCAAAAAAATGGCCATATCTTGAGTCATTGACTATTTCAGGTAGCTTTCCTATTAAATTCATGAAGGCAATTGGTCAGCATTGCAAGAAACCTCAGCAAGCTGAAAATGCTGCGCCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

263

Amino Acids

29.28

Weight (kDa)

6.33

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 103 - 142 1.1e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 35, 78, 149, 182, 385
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 2 cut(s) 48, 725
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 411
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 3 cut(s) 221, 454, 662
AhlI ACTAGT 1 cut(s) 646
AjnI CCWGG 1 cut(s) 300
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 5 cut(s) 395, 436, 463, 714, 770
AluI AGCT 5 cut(s) 395, 436, 463, 714, 770
Alw21I GWGCWC 1 cut(s) 465
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 441, 680
ApeKI GCWGC 4 cut(s) 146, 392, 668, 779
ApoI RAATTY 2 cut(s) 48, 725
AseI ATTAAT 1 cut(s) 353
AspLEI GCGC 1 cut(s) 784
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 55, 178
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 75
BalI TGGCCA 1 cut(s) 682
BanII GRGCYC 2 cut(s) 204, 465
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 133, 404, 680, 766
BccI CCATC 6 cut(s) 34, 98, 121, 157, 191, 285
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 1 cut(s) 601
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 2 cut(s) 242, 647
BfrI CTTAAG 1 cut(s) 427
BglII AGATCT 1 cut(s) 223
BisI GCNGC 4 cut(s) 147, 393, 669, 780
BlsI GCNGC 4 cut(s) 148, 394, 670, 781
Bme1390I CCNGG 2 cut(s) 302, 601
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 4 cut(s) 76, 153, 187, 402
BmrFI CCNGG 2 cut(s) 302, 601
BmsI GCATC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 458
Bpu10I CCTNAGC 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 262, 710
BpuMI CCSGG 1 cut(s) 601
BsaAI YACGTR 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse118I RCCGGY 1 cut(s) 784
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 748
BseBI CCWGG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 1 cut(s) 626
BseXI GCAGC 4 cut(s) 133, 404, 680, 766
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 443, 682
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 3 cut(s) 57, 601, 785
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 2 cut(s) 443, 682
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 204, 465
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 5 cut(s) 35, 78, 149, 182, 385
BspANI GGCC 2 cut(s) 443, 682
BspCNI CTCAG 1 cut(s) 775
BspHI TCATGA 2 cut(s) 330, 729
BspLI GGNNCC 4 cut(s) 76, 153, 187, 402
BspTI CTTAAG 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 784
BsrI ACTGG 1 cut(s) 626
BssAI RCCGGY 1 cut(s) 784
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 302
BstAFI CTTAAG 1 cut(s) 427
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 768, 786
BstDEI CTNAG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 776, 785
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 300, 599
BstSNI TACGTA 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 133, 404, 680, 766
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 2 cut(s) 443, 682
BtgZI GCGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 768, 786
CciI TCATGA 2 cut(s) 330, 729
CfoI GCGC 1 cut(s) 784
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 320
CviAII CATG 2 cut(s) 331, 730
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 1 cut(s) 762
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 680
Ecl136II GAGCTC 1 cut(s) 463
Eco105I TACGTA 1 cut(s) 323
Eco24I GRGCYC 2 cut(s) 204, 465
Eco47I GGWCC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 204, 465
FaeI CATG 2 cut(s) 334, 733
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 300, 332
FaqI GGGAC 1 cut(s) 647
FatI CATG 2 cut(s) 330, 729
FauI CCCGC 2 cut(s) 175, 378
Fnu4HI GCNGC 4 cut(s) 147, 393, 669, 780
FriOI GRGCYC 2 cut(s) 204, 465
Fsp4HI GCNGC 4 cut(s) 147, 393, 669, 780
FspBI CTAG 2 cut(s) 242, 647
GlaI GCGC 1 cut(s) 783
GluI GCNGC 4 cut(s) 147, 393, 669, 780
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 2 cut(s) 443, 682
HapII CCGG 3 cut(s) 57, 601, 785
HhaI GCGC 1 cut(s) 784
Hin1II CATG 2 cut(s) 334, 733
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 5 cut(s) 108, 119, 214, 604, 692
HpaII CCGG 3 cut(s) 57, 601, 785
HphI GGTGA 2 cut(s) 55, 178
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 400, 592
Hpy188III TCNNGA 7 cut(s) 218, 242, 279, 331, 458, 689, 730
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 3 cut(s) 22, 119, 233
HpyAV CCTTC 3 cut(s) 133, 166, 727
HpyCH4IV ACGT 2 cut(s) 20, 322
HpyCH4V TGCA 2 cut(s) 375, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 776, 785
HpyF3I CTNAG 1 cut(s) 762
HpySE526I ACGT 2 cut(s) 20, 322
Hsp92II CATG 2 cut(s) 334, 733
HspAI GCGC 1 cut(s) 782
KroI GCCGGC 1 cut(s) 784
KroNI GCCGGC 1 cut(s) 786
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 151, 185
Lsp1109I GCAGC 4 cut(s) 133, 404, 680, 766
LweI GCATC 1 cut(s) 374
MaeI CTAG 2 cut(s) 242, 647
MaeII ACGT 2 cut(s) 20, 322
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 113, 233, 674
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 204, 465
MlsI TGGCCA 1 cut(s) 682
MluCI AATT 4 cut(s) 48, 350, 725, 738
MluNI TGGCCA 1 cut(s) 682
MlyI GAGTC 2 cut(s) 223, 701
MnlI CCTC 7 cut(s) 37, 129, 162, 419, 433, 474, 771
Mox20I TGGCCA 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 784
MscI TGGCCA 1 cut(s) 682
MseI TTAA 5 cut(s) 353, 428, 515, 651, 723
MslI CAYNNNNRTG 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 682
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 3 cut(s) 57, 601, 785
MspR9I CCNGG 2 cut(s) 302, 601
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 776, 785
NaeI GCCGGC 1 cut(s) 786
NciI CCSGG 1 cut(s) 601
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 784
NlaIII CATG 2 cut(s) 334, 733
NlaIV GGNNCC 4 cut(s) 76, 153, 187, 402
NmeAIII GCCGAG 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 209
PagI TCATGA 2 cut(s) 330, 729
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 786
PfeI GAWTC 3 cut(s) 108, 119, 604
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 148, 394, 670, 781
PleI GAGTC 2 cut(s) 222, 700
PpsI GAGTC 2 cut(s) 222, 700
Ppu21I YACGTR 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 76, 153, 187, 402
PspPI GGNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 5 cut(s) 353, 428, 515, 651, 723
SatI GCNGC 4 cut(s) 147, 393, 669, 780
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 2 cut(s) 223, 701
ScrFI CCNGG 2 cut(s) 302, 601
SduI GDGCHC 2 cut(s) 204, 465
SfaNI GCATC 1 cut(s) 374
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 3 cut(s) 277, 427, 689
SmoI CTYRAG 3 cut(s) 277, 427, 689
SnaBI TACGTA 1 cut(s) 323
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 4 cut(s) 48, 350, 725, 738
SsiI CCGC 5 cut(s) 35, 78, 149, 182, 385
SspMI CTAG 2 cut(s) 242, 647
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 300, 599
TaiI ACGT 2 cut(s) 23, 325
TaqI TCGA 2 cut(s) 83, 457
TaqII GACCGA 1 cut(s) 101
TasI AATT 4 cut(s) 48, 350, 725, 738
TfiI GAWTC 3 cut(s) 108, 119, 604
Tru1I TTAA 5 cut(s) 353, 428, 515, 651, 723
Tru9I TTAA 5 cut(s) 353, 428, 515, 651, 723
TscAI CASTG 1 cut(s) 342
TseI GCWGC 4 cut(s) 146, 392, 668, 779
TspDTI ATGAA 4 cut(s) 114, 319, 718, 746
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 342
Tth111I GACNNNGTC 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 75
VspI ATTAAT 1 cut(s) 353
XapI RAATTY 2 cut(s) 48, 725
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 2 cut(s) 242, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.