Rh7AG172200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004535
Physical Location & Seq
Forward (+)
14923950 .. 14928161
4212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG172200.1

Sequence Viewer

Length: 963 bp
ATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGCGAGCTGAAAATGATGCACCGGTTTGACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGGTCATAAGTCTTCGGTGCAATAGAGTGCACAGGGATGCTATACTTTTCTTGCTCGAGGAATTGAGGCAGTTAGAAGTGTTGAATATAACTAACTGCCTCATTCTGGATCACTTTCTAAAACCTGGTTTCTGGTCTGTGCTCCCTGAACTTGATGAGTTTGTCCTTCAAGAGGCTTCGCGGCTAAAGAAGTTTCTGTTTTGTCAGATGCGCTCCTGCAATGTTTGCCACTTTCAGATTAATTCAAATGGGCTCTTGTTCTGGACTCAAAACAATGAAGCCATTTGGATAATGGACGAGATGAACAACAAGTACAACTTCAGAAATCAGCTGGGAGAGATGTGGAATGATCTCATTTCACGTATATTCATGAGCTTAAGTGTCATGGATGTCATTCGCTGCGGAAGTGTTTGCTGCTTTTGGAGGGAAGTTTCTTCCAATACCAGACTTTGGAAGACTATAGACTTAACTAAGGTGGACTCAGAAATATTTCTTCAATCTAGGTCAGGCCATATTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATGTTACTTGCCTGGGATTCATACTGATACACTCTCTTCATTGCAGAATACTGAATCTAAGAAGACTAGTTCTACTGGTACGGTATAGAGAGTTAAAAGTGGCTGGATTTGAAGCTGCTTTGAAGAACTGGCCACAACTTGAGTCACTGACCATTCCATGTGACTTTCTTGTGGAAATCATGGAGGTGATTGGTAAGCACTGTAATAAATTGGCGCAGATGAAATTGATGTGTGATTTTTATGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

320

Amino Acids

37.28

Weight (kDa)

8.47

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 152 - 191 1.9e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 555
AccII CGCG 1 cut(s) 286
AciI CCGC 2 cut(s) 286, 507
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 791
AcsI RAATTY 1 cut(s) 630
AcuI CTGAAG 1 cut(s) 409
AfaI GTAC 3 cut(s) 419, 741, 908
AfiI CCNNNNNNNGG 3 cut(s) 211, 277, 555
AflII CTTAAG 1 cut(s) 481
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 8 cut(s) 106, 190, 275, 351, 602, 637, 773, 784
AhlI ACTAGT 1 cut(s) 727
AjnI CCWGG 2 cut(s) 229, 672
AluBI AGCT 4 cut(s) 40, 436, 480, 776
AluI AGCT 4 cut(s) 40, 436, 480, 776
Alw21I GWGCWC 2 cut(s) 138, 249
Alw44I GTGCAC 1 cut(s) 134
AlwI GGATC 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 2 cut(s) 613, 791
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 4 cut(s) 504, 519, 776, 923
ApoI RAATTY 1 cut(s) 630
AseI ATTAAT 1 cut(s) 345
AsiGI ACCGGT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 2 cut(s) 318, 877
AsuHPI GGTGA 1 cut(s) 859
AvaI CYCGRG 1 cut(s) 161
AxyI CCTNAGG 1 cut(s) 956
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 793
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 3 cut(s) 110, 566, 730
Bbv12I GWGCWC 2 cut(s) 138, 249
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 491, 506, 763, 910
BciT130I CCWGG 2 cut(s) 231, 674
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 2 cut(s) 606, 728
BfmI CTRYAG 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 481
BisI GCNGC 5 cut(s) 287, 505, 520, 777, 924
BlsI GCNGC 5 cut(s) 288, 506, 521, 778, 925
Bme1390I CCNGG 2 cut(s) 231, 674
BmeT110I CYCGRG 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 231, 674
BmsI GCATC 3 cut(s) 39, 133, 303
BpiI GAAGAC 3 cut(s) 110, 566, 730
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 673
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 277, 555
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 741, 794
Bse21I CCTNAGG 1 cut(s) 956
Bse3DI GCAATG 2 cut(s) 331, 700
BseBI CCWGG 2 cut(s) 231, 674
BseDI CCNNGG 1 cut(s) 673
BseGI GGATG 2 cut(s) 148, 499
BseLI CCNNNNNNNGG 3 cut(s) 211, 277, 555
BseMI GCAATG 2 cut(s) 331, 700
BseMII CTCAG 2 cut(s) 46, 600
BseNI ACTGG 2 cut(s) 741, 794
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 4 cut(s) 491, 506, 763, 910
BseYI CCCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 615, 793
BshTI ACCGGT 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 138, 249
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 3 cut(s) 211, 277, 555
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 615, 793
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 138, 249, 360
Bsp143I GATC 2 cut(s) 214, 454
BspACI CCGC 2 cut(s) 286, 507
BspANI GGCC 2 cut(s) 615, 793
BspCNI CTCAG 2 cut(s) 45, 599
BspFNI CGCG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 474
BspPI GGATC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 331, 700
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 2 cut(s) 741, 794
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 2 cut(s) 214, 454
Bst2UI CCWGG 2 cut(s) 231, 674
Bst4CI ACNGT 2 cut(s) 744, 863
Bst6I CTCTTC 1 cut(s) 702
BstAFI CTTAAG 1 cut(s) 481
BstAPI GCANNNNNTGC 2 cut(s) 330, 923
BstBAI YACGTR 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 5 cut(s) 32, 576, 586, 719, 956
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 148, 499
BstFNI CGCG 1 cut(s) 286
BstHHI GCGC 2 cut(s) 318, 877
BstKTI GATC 2 cut(s) 217, 457
BstMBI GATC 2 cut(s) 214, 454
BstMWI GCNNNNNNNGC 2 cut(s) 330, 923
BstNI CCWGG 2 cut(s) 231, 674
BstSCI CCNGG 2 cut(s) 229, 672
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 4 cut(s) 491, 506, 763, 910
BstV2I GAAGAC 3 cut(s) 110, 566, 730
Bsu36I CCTNAGG 1 cut(s) 956
BsuRI GGCC 2 cut(s) 615, 793
BtsCI GGATG 2 cut(s) 148, 499
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 806, 859
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 1 cut(s) 923
CciI TCATGA 1 cut(s) 474
CfoI GCGC 2 cut(s) 318, 877
Cfr10I RCCGGY 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 3 cut(s) 418, 740, 907
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 5 cut(s) 64, 475, 490, 819, 841
CviQI GTAC 3 cut(s) 418, 740, 907
DdeI CTNAG 5 cut(s) 32, 576, 586, 719, 956
DpnI GATC 2 cut(s) 216, 456
DpnII GATC 2 cut(s) 214, 454
EaeI YGGCCR 1 cut(s) 791
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 409
Eco81I CCTNAGG 1 cut(s) 956
Eco88I CYCGRG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 229, 672
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 5 cut(s) 67, 478, 493, 822, 844
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 5 cut(s) 63, 474, 489, 818, 840
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 5 cut(s) 287, 505, 520, 777, 924
FokI GGATG 2 cut(s) 155, 506
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 5 cut(s) 287, 505, 520, 777, 924
FspBI CTAG 2 cut(s) 606, 728
GlaI GCGC 2 cut(s) 317, 876
GluI GCNGC 5 cut(s) 287, 505, 520, 777, 924
GsaI CCCAGC 1 cut(s) 440
HaeIII GGCC 2 cut(s) 615, 793
HapII CCGG 1 cut(s) 55
HhaI GCGC 2 cut(s) 318, 877
Hin1II CATG 5 cut(s) 67, 478, 493, 822, 844
Hin6I GCGC 2 cut(s) 316, 875
HinP1I GCGC 2 cut(s) 316, 875
HinfI GANTC 5 cut(s) 370, 584, 678, 715, 803
HpaII CCGG 1 cut(s) 55
HphI GGTGA 1 cut(s) 859
Hpy166II GTNNAC 2 cut(s) 136, 583
Hpy188I TCNGA 4 cut(s) 312, 342, 428, 589
Hpy188III TCNNGA 5 cut(s) 212, 275, 367, 475, 949
Hpy8I GTNNAC 2 cut(s) 136, 583
HpyAV CCTTC 2 cut(s) 100, 281
HpyCH4III ACNGT 2 cut(s) 744, 863
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 9 cut(s) 24, 52, 74, 89, 95, 126, 136, 324, 705
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 923
HpyF3I CTNAG 5 cut(s) 32, 576, 586, 719, 956
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 5 cut(s) 67, 478, 493, 822, 844
HspAI GCGC 2 cut(s) 316, 875
Kzo9I GATC 2 cut(s) 214, 454
LmnI GCTCC 2 cut(s) 252, 323
Lsp1109I GCAGC 4 cut(s) 491, 506, 763, 910
LweI GCATC 3 cut(s) 39, 133, 303
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 2 cut(s) 606, 728
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 3 cut(s) 664, 804, 821
MalI GATC 2 cut(s) 216, 456
MboI GATC 2 cut(s) 214, 454
MboII GAAGA 7 cut(s) 110, 531, 571, 590, 689, 735, 796
MfeI CAATTG 1 cut(s) 9
MhlI GDGCHC 3 cut(s) 138, 249, 360
MlsI TGGCCA 1 cut(s) 793
MluCI AATT 7 cut(s) 9, 67, 167, 346, 630, 869, 884
MluNI TGGCCA 1 cut(s) 793
MlyI GAGTC 3 cut(s) 364, 578, 812
MnlI CCTC 8 cut(s) 41, 157, 165, 215, 271, 522, 838, 907
Mox20I TGGCCA 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 594
MscI TGGCCA 1 cut(s) 793
MseI TTAA 5 cut(s) 345, 482, 572, 755, 941
MslI CAYNNNNRTG 2 cut(s) 141, 845
Msp20I TGGCCA 1 cut(s) 793
MspA1I CMGCKG 1 cut(s) 436
MspCI CTTAAG 1 cut(s) 481
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 231, 674
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 231, 674
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 330, 923
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 214, 454
NlaIII CATG 5 cut(s) 67, 478, 493, 822, 844
NmuCI GTSAC 2 cut(s) 804, 821
PaeR7I CTCGAG 1 cut(s) 161
PagI TCATGA 1 cut(s) 474
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 678, 715
PflMI CCANNNNNTGG 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 5 cut(s) 288, 506, 521, 778, 925
PleI GAGTC 3 cut(s) 364, 578, 811
PpsI GAGTC 3 cut(s) 364, 578, 811
Ppu21I YACGTR 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 229, 672
PspFI CCCAGC 1 cut(s) 436
PspGI CCWGG 2 cut(s) 229, 672
PspXI VCTCGAGB 1 cut(s) 161
PsrI GAACNNNNNNTAC 2 cut(s) 401, 433
PstNI CAGNNNCTG 1 cut(s) 923
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 3 cut(s) 419, 741, 908
RsaNI GTAC 3 cut(s) 418, 740, 907
RseI CAYNNNNRTG 2 cut(s) 141, 845
SaqAI TTAA 5 cut(s) 345, 482, 572, 755, 941
SatI GCNGC 5 cut(s) 287, 505, 520, 777, 924
Sau3AI GATC 2 cut(s) 214, 454
SchI GAGTC 3 cut(s) 364, 578, 812
ScrFI CCNGG 2 cut(s) 231, 674
SduI GDGCHC 3 cut(s) 138, 249, 360
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 3 cut(s) 39, 133, 303
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 141, 845
SmlI CTYRAG 4 cut(s) 161, 481, 800, 949
SmoI CTYRAG 4 cut(s) 161, 481, 800, 949
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 7 cut(s) 9, 67, 167, 346, 630, 869, 884
SsiI CCGC 2 cut(s) 286, 507
SspI AATATT 1 cut(s) 594
SspMI CTAG 2 cut(s) 606, 728
StyD4I CCNGG 2 cut(s) 229, 672
TaaI ACNGT 2 cut(s) 744, 863
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 162
TasI AATT 7 cut(s) 9, 67, 167, 346, 630, 869, 884
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 2 cut(s) 678, 715
Tru1I TTAA 5 cut(s) 345, 482, 572, 755, 941
Tru9I TTAA 5 cut(s) 345, 482, 572, 755, 941
TscAI CASTG 3 cut(s) 26, 813, 866
TseFI GTSAC 2 cut(s) 804, 821
TseI GCWGC 4 cut(s) 504, 519, 776, 923
Tsp45I GTSAC 2 cut(s) 804, 821
TspDTI ATGAA 8 cut(s) 17, 80, 396, 422, 463, 670, 689, 896
TspRI CASTG 3 cut(s) 26, 813, 866
Van91I CCANNNNNTGG 1 cut(s) 555
Vha464I CTTAAG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 1 cut(s) 630
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 2 cut(s) 606, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.