FvH4_5g01901

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004535
Physical Location & Seq
Reverse (-)
1185459 .. 1187398
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01901.t1

Sequence Viewer

Length: 870 bp
ATGGAGTCAGCATCCGATCTTGCAGGTACAATCTATTCAAATACAATGCTCAACTCGAAATCAAAACACAGAAACTGGGCTGAAATGGAACAAGGCATACTGCTCAAGATCTTCACGGCTCTTAATGTCATGGATTTGGTTGGTAGTGTTTCTGTTGTTTGTAGCACATGGCATTCTGTATGTCATGAACCCTGCCTGTGGGAATCCATAAATATGAGTGTGCTGGCCCCGAATCTCATTGTTACTGAGCAAGAAGTACATAACTTAAGCAATGAGGAGCACAATGAGCAGCTGATCCATGCTTCTCAGAGAATCTCGGAACTGAAAAGACTTGTTCTCCCACCAAGGAATCTTCTAACACTGGCTGGATTTGAAGAGTCCATAAAGAACTGGGCACAACTAGAGTCATTTACCATGCCACTTGCTTTGTTTGAGTTTGAAATGGTGAAGTTGATCGGAGCTCACTGCAAGAATTTCTCTGAGCTCAAAGTTTTCTGCCCCTTTGTGGTCGGATTTGCAAAGACCATTGCTACCTATATCCCGAACTTAAAGGTTTTAAGTCTTCAGGGCAGCTTGGTGGAGAAGGAAGCCTTGGTTTACTTACTAAACAACACGAAAAAATTGGAAGTGTTGAACTTGTGTCACTGCCTCATTGTGGATGAAGGCCTTCCAGCACCAGGCTATGCTTATGCAGCGCTTGCACTTGACATGTCTATCATGGAAAGGGCCTCTGAGATGAAGAACTTTCTAGTTTGTAATGCAGACTACTGTCATGTCTGCCAGCTCATGTTTATCACTGAAGGGAACTCAGGGTGGTCCGACATTGGAATATGGCGAAGGGACATGGTGAGTACGCTTGCAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

290

Amino Acids

32.42

Weight (kDa)

5.38

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 33 - 71 1.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 2 cut(s) 548, 819
AfaI GTAC 3 cut(s) 28, 258, 853
AfeI AGCGCT 1 cut(s) 696
AfiI CCNNNNNNNGG 4 cut(s) 198, 505, 655, 677
AflII CTTAAG 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 4 cut(s) 39, 374, 440, 634
AjnI CCWGG 1 cut(s) 676
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 5 cut(s) 292, 461, 484, 573, 784
AluI AGCT 5 cut(s) 292, 461, 484, 573, 784
Alw21I GWGCWC 3 cut(s) 282, 463, 486
AlwI GGATC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 75
Aor51HI AGCGCT 1 cut(s) 696
AoxI GGCC 3 cut(s) 225, 664, 726
ApeKI GCWGC 4 cut(s) 289, 570, 692, 860
ApoI RAATTY 1 cut(s) 472
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 3 cut(s) 226, 726, 816
AsuHPI GGTGA 2 cut(s) 457, 859
AvaII GGWCC 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 397
BanII GRGCYC 2 cut(s) 463, 486
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 3 cut(s) 282, 463, 486
BbvI GCAGC 3 cut(s) 301, 582, 704
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 678
BfaI CTAG 2 cut(s) 401, 749
BfoI RGCGCY 1 cut(s) 698
BfrI CTTAAG 1 cut(s) 265
BfuAI ACCTGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 108
BisI GCNGC 4 cut(s) 290, 571, 693, 861
BlsI GCNGC 4 cut(s) 291, 572, 694, 862
Bme1390I CCNGG 1 cut(s) 678
Bme18I GGWCC 1 cut(s) 816
BmgT120I GGNCC 3 cut(s) 226, 726, 816
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 678
BmrI ACTGGG 2 cut(s) 85, 400
BmsI GCATC 1 cut(s) 20
BmuI ACTGGG 2 cut(s) 85, 400
BoxI GACNNNNGTC 1 cut(s) 768
BpiI GAAGAC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 344, 591
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 505, 655, 677
Bse1I ACTGG 3 cut(s) 80, 366, 395
Bse3DI GCAATG 2 cut(s) 277, 525
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 344, 591
BseGI GGATG 2 cut(s) 11, 664
BseLI CCNNNNNNNGG 4 cut(s) 198, 505, 655, 677
BseMI GCAATG 2 cut(s) 277, 525
BseMII CTCAG 5 cut(s) 237, 320, 471, 723, 822
BseNI ACTGG 3 cut(s) 80, 366, 395
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 301, 582, 704
BshFI GGCC 3 cut(s) 227, 666, 728
BsiHKAI GWGCWC 3 cut(s) 282, 463, 486
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 4 cut(s) 198, 505, 655, 677
BsmFI GGGAC 1 cut(s) 854
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 3 cut(s) 227, 666, 728
Bsp1286I GDGCHC 4 cut(s) 282, 397, 463, 486
Bsp143I GATC 4 cut(s) 16, 108, 294, 453
BspANI GGCC 3 cut(s) 227, 666, 728
BspCNI CTCAG 5 cut(s) 238, 319, 472, 724, 821
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 265
BsrDI GCAATG 2 cut(s) 277, 525
BsrI ACTGG 3 cut(s) 80, 366, 395
BssECI CCNNGG 2 cut(s) 344, 591
BssMI GATC 4 cut(s) 16, 108, 294, 453
BssT1I CCWWGG 2 cut(s) 344, 591
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 1 cut(s) 770
Bst6I CTCTTC 1 cut(s) 369
BstAFI CTTAAG 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 4 cut(s) 225, 699, 782, 858
BstDEI CTNAG 5 cut(s) 246, 306, 480, 732, 808
BstF5I GGATG 2 cut(s) 11, 664
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 4 cut(s) 19, 111, 297, 456
BstMBI GATC 4 cut(s) 16, 108, 294, 453
BstMWI GCNNNNNNNGC 3 cut(s) 286, 692, 698
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 1 cut(s) 712
BstPAI GACNNNNGTC 1 cut(s) 768
BstSCI CCNGG 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 301, 582, 704
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 3 cut(s) 227, 666, 728
BtsCI GGATG 2 cut(s) 11, 664
BtsI GCAGTG 2 cut(s) 463, 643
BtsIMutI CAGTG 4 cut(s) 359, 463, 643, 795
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 4 cut(s) 225, 699, 782, 858
CaiI CAGNNNCTG 1 cut(s) 75
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 697
Cfr13I GGNCC 3 cut(s) 226, 726, 816
Csp6I GTAC 3 cut(s) 27, 257, 852
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviQI GTAC 3 cut(s) 27, 257, 852
DdeI CTNAG 5 cut(s) 246, 306, 480, 732, 808
DpnI GATC 4 cut(s) 18, 110, 296, 455
DpnII GATC 4 cut(s) 16, 108, 294, 453
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Ecl136II GAGCTC 2 cut(s) 461, 484
Eco130I CCWWGG 2 cut(s) 344, 591
Eco147I AGGCCT 1 cut(s) 666
Eco24I GRGCYC 2 cut(s) 463, 486
Eco47I GGWCC 1 cut(s) 816
Eco47III AGCGCT 1 cut(s) 696
Eco53kI GAGCTC 2 cut(s) 461, 484
Eco57I CTGAAG 2 cut(s) 548, 819
EcoICRI GAGCTC 2 cut(s) 461, 484
EcoO109I RGGNCCY 1 cut(s) 726
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 344, 591
EcoT38I GRGCYC 2 cut(s) 463, 486
ErhI CCWWGG 2 cut(s) 344, 591
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 1 cut(s) 854
Fnu4HI GCNGC 4 cut(s) 290, 571, 693, 861
FokI GGATG 1 cut(s) 671
FriOI GRGCYC 2 cut(s) 463, 486
Fsp4HI GCNGC 4 cut(s) 290, 571, 693, 861
FspBI CTAG 2 cut(s) 401, 749
GlaI GCGC 1 cut(s) 696
GluI GCNGC 4 cut(s) 290, 571, 693, 861
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 3 cut(s) 227, 666, 728
HhaI GCGC 1 cut(s) 697
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HinfI GANTC 7 cut(s) 5, 203, 232, 312, 349, 377, 404
HphI GGTGA 2 cut(s) 457, 859
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 8 cut(s) 16, 309, 319, 458, 481, 512, 733, 820
Hpy188III TCNNGA 3 cut(s) 106, 185, 541
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 5 cut(s) 577, 656, 677, 794, 831
HpyCH4III ACNGT 1 cut(s) 770
HpyCH4V TGCA 7 cut(s) 23, 468, 518, 692, 701, 761, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 692, 698
HpyF3I CTNAG 5 cut(s) 246, 306, 480, 732, 808
HspAI GCGC 1 cut(s) 695
Kzo9I GATC 4 cut(s) 16, 108, 294, 453
LmnI GCTCC 2 cut(s) 277, 458
Lsp1109I GCAGC 3 cut(s) 301, 582, 704
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 401, 749
MaeIII GTNAC 2 cut(s) 241, 641
MalI GATC 4 cut(s) 18, 110, 296, 455
MboI GATC 4 cut(s) 16, 108, 294, 453
MboII GAAGA 5 cut(s) 103, 344, 386, 554, 751
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 4 cut(s) 282, 397, 463, 486
MluCI AATT 2 cut(s) 472, 620
MlyI GAGTC 3 cut(s) 14, 386, 413
MmeI TCCRAC 2 cut(s) 490, 843
MnlI CCTC 3 cut(s) 268, 659, 739
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 4 cut(s) 123, 266, 548, 557
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 292
MspCI CTTAAG 1 cut(s) 265
MspR9I CCNGG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 3 cut(s) 286, 692, 698
NdeII GATC 4 cut(s) 16, 108, 294, 453
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 641
NspI RCATGY 1 cut(s) 712
PagI TCATGA 1 cut(s) 184
PceI AGGCCT 1 cut(s) 666
PciI ACATGT 1 cut(s) 708
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 4 cut(s) 203, 232, 312, 349
PkrI GCNGC 4 cut(s) 291, 572, 694, 862
PleI GAGTC 3 cut(s) 13, 385, 412
PpsI GAGTC 3 cut(s) 13, 385, 412
PscI ACATGT 1 cut(s) 708
PshAI GACNNNNGTC 1 cut(s) 768
Psp124BI GAGCTC 2 cut(s) 463, 486
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 3 cut(s) 226, 726, 816
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PstNI CAGNNNCTG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 3 cut(s) 28, 258, 853
RsaNI GTAC 3 cut(s) 27, 257, 852
RseI CAYNNNNRTG 1 cut(s) 212
SacI GAGCTC 2 cut(s) 463, 486
SaqAI TTAA 4 cut(s) 123, 266, 548, 557
SatI GCNGC 4 cut(s) 290, 571, 693, 861
Sau3AI GATC 4 cut(s) 16, 108, 294, 453
Sau96I GGNCC 3 cut(s) 226, 726, 816
SchI GAGTC 3 cut(s) 14, 386, 413
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 4 cut(s) 282, 397, 463, 486
SetI ASST 8 cut(s) 28, 294, 463, 486, 536, 555, 575, 786
SfaNI GCATC 1 cut(s) 20
SinI GGWCC 1 cut(s) 816
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 104, 265
SmoI CTYRAG 2 cut(s) 104, 265
Sse9I AATT 2 cut(s) 472, 620
SseBI AGGCCT 1 cut(s) 666
SspMI CTAG 2 cut(s) 401, 749
SstI GAGCTC 2 cut(s) 463, 486
StuI AGGCCT 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 676
StyI CCWWGG 2 cut(s) 344, 591
TaaI ACNGT 1 cut(s) 770
TaqI TCGA 1 cut(s) 56
TasI AATT 2 cut(s) 472, 620
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 4 cut(s) 203, 232, 312, 349
Tru1I TTAA 4 cut(s) 123, 266, 548, 557
Tru9I TTAA 4 cut(s) 123, 266, 548, 557
TscAI CASTG 4 cut(s) 366, 470, 650, 802
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 4 cut(s) 289, 570, 692, 860
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 3 cut(s) 201, 675, 752
TspRI CASTG 4 cut(s) 366, 470, 650, 802
Vha464I CTTAAG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 816
XapI RAATTY 1 cut(s) 472
XceI RCATGY 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 2 cut(s) 401, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.