Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

15746465 .. 15747449

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAAGATGAACAACAAGTACAACTTCAGAAATCAGGGAGAGATGGGGAATGATCTCATTTCACGTATATTCACGAGCTTAAGTGTCATGGATGTCATTCGCTGCGGAAGTGTTTGCTGCTCTTGGAGGGAAGTTTCTTCCAATACCAGACTTTGGAAGACTATAGACTTAACTAAGGTGGACTCAGAAATATTTCTTCAATCTAGGTCAGGCCATATTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATTTTACTTGCCTGAGAGTCAAAGTGGCTGGATTTGAAGCTGCTTTGAAGAACTGGCCACAACTTGAGTCACTGACCATTCCATGTGACTTTCTTGTGGAAATCATGGAGGTGATTGGTAAGCACTGTAATAAATTCGCGGAGATGAAATTGATGTGTGATTTTTATGAGGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGCGCTGAAGTGTCCAGGGGAGCTGTGCTTCACATACTGAATGAAATGAATCATTTGCAAGTGCTCAATTTATCTCACTCCTACATTGTGGATCACGCTCCAACACCAAACCGCCACATAGTAGTACTCCGTGAACTTGATCAGGTGGTCATTGAAGCAGCATCATGGCTGAAGAAATTTCTTTTCTGTCGTAGCAGACTCTACTGCAACACTTGCAGGCTTCAGTTAAGTATGAATGGAGTGCTGATGCGGTGCAGATATGAAGAACGAGTTTGGAGAATGGATGAGGTGAGCTCACTTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

264

Amino Acids

30.41

Weight (kDa)

8.43

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 53	2.1e-06	F-box domain
F-box-like	PF12937	18 - 57	4.3e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccII	CGCG	1 cut(s)	398
AciI	CCGC	4 cut(s)	105, 398, 598, 736
AclWI	GGATC	1 cut(s)	585
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	3 cut(s)	228, 392, 662
AcuI	CTGAAG	4 cut(s)	10, 513, 677, 692
AfaI	GTAC	3 cut(s)	20, 434, 612
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	200, 235, 296, 307, 641
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	4 cut(s)	78, 299, 509, 780
AluI	AGCT	4 cut(s)	78, 299, 509, 780
Alw21I	GWGCWC	2 cut(s)	552, 782
AlwI	GGATC	1 cut(s)	585
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	211, 314
ApeKI	GCWGC	5 cut(s)	102, 117, 299, 449, 644
ApoI	RAATTY	3 cut(s)	228, 392, 662
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	382, 787
AxyI	CCTNAGG	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	782
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	552, 782
BbvI	GCAGC	5 cut(s)	89, 104, 286, 436, 656
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	625
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	5 cut(s)	103, 118, 300, 450, 645
BlsI	GCNGC	5 cut(s)	104, 119, 301, 451, 646
BmcAI	AGTACT	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	502
BmrFI	CCNGG	1 cut(s)	502
BmsI	GCATC	2 cut(s)	656, 723
BpiI	GAAGAC	1 cut(s)	164
BplI	GAGNNNNNCTC	1 cut(s)	764
BpuEI	CTTGAG	2 cut(s)	344, 496
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	317
Bse21I	CCTNAGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	97, 775
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	198, 263
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	5 cut(s)	89, 104, 286, 436, 656
BsgI	GTGCAG	1 cut(s)	760
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	213, 316
BsiHKAI	GWGCWC	2 cut(s)	552, 782
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	213, 316
Bsp1286I	GDGCHC	2 cut(s)	552, 782
Bsp143I	GATC	3 cut(s)	52, 577, 625
BspACI	CCGC	4 cut(s)	105, 398, 598, 736
BspANI	GGCC	2 cut(s)	213, 316
BspCNI	CTCAG	2 cut(s)	197, 264
BspFNI	CGCG	1 cut(s)	398
BspPI	GGATC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	52, 577, 625
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	79
BstAPI	GCANNNNNTGC	2 cut(s)	449, 699
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	4 cut(s)	174, 184, 272, 482
BstF5I	GGATG	2 cut(s)	97, 775
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	3 cut(s)	55, 580, 628
BstMBI	GATC	3 cut(s)	52, 577, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 486, 699
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	5 cut(s)	89, 104, 286, 436, 656
BstV2I	GAAGAC	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	213, 316
BtsCI	GGATG	2 cut(s)	97, 775
BtsIMutI	CAGTG	2 cut(s)	329, 382
Cac8I	GCNNGC	1 cut(s)	704
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	19, 433, 611
CviAII	CATG	4 cut(s)	88, 342, 364, 651
CviQI	GTAC	3 cut(s)	19, 433, 611
DdeI	CTNAG	4 cut(s)	174, 184, 272, 482
DpnI	GATC	3 cut(s)	54, 579, 627
DpnII	GATC	3 cut(s)	52, 577, 625
EaeI	YGGCCR	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	780
Eco57I	CTGAAG	4 cut(s)	10, 513, 677, 692
Eco81I	CCTNAGG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	780
EcoRII	CCWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	782
FaeI	CATG	4 cut(s)	91, 345, 367, 654
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	4 cut(s)	87, 341, 363, 650
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	103, 118, 300, 450, 645
FokI	GGATG	2 cut(s)	104, 782
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	5 cut(s)	103, 118, 300, 450, 645
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	5 cut(s)	103, 118, 300, 450, 645
HaeIII	GGCC	2 cut(s)	213, 316
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	4 cut(s)	91, 345, 367, 654
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	5 cut(s)	182, 276, 326, 535, 684
HphI	GGTGA	2 cut(s)	382, 787
Hpy166II	GTNNAC	2 cut(s)	181, 620
Hpy188I	TCNGA	2 cut(s)	29, 187
Hpy188III	TCNNGA	2 cut(s)	73, 475
Hpy8I	GTNNAC	2 cut(s)	181, 620
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	4 cut(s)	544, 693, 702, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 486, 699
HpyF3I	CTNAG	4 cut(s)	174, 184, 272, 482
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	91, 345, 367, 654
HspAI	GCGC	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	52, 577, 625
LmnI	GCTCC	2 cut(s)	506, 589
Lsp1109I	GCAGC	5 cut(s)	89, 104, 286, 436, 656
LweI	GCATC	2 cut(s)	656, 723
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	327, 344
MalI	GATC	3 cut(s)	54, 579, 627
MboI	GATC	3 cut(s)	52, 577, 625
MboII	GAAGA	7 cut(s)	16, 129, 169, 188, 319, 670, 761
MhlI	GDGCHC	2 cut(s)	552, 782
MlsI	TGGCCA	1 cut(s)	316
MluCI	AATT	5 cut(s)	228, 392, 407, 553, 662
MluNI	TGGCCA	1 cut(s)	316
MlyI	GAGTC	4 cut(s)	176, 285, 335, 678
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	5 cut(s)	120, 361, 421, 433, 766
Mox20I	TGGCCA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	316
MseI	TTAA	4 cut(s)	80, 170, 467, 713
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	316
MspCI	CTTAAG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	502
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	3 cut(s)	449, 486, 699
NdeII	GATC	3 cut(s)	52, 577, 625
NlaIII	CATG	4 cut(s)	91, 345, 367, 654
NmuCI	GTSAC	2 cut(s)	327, 344
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	104, 119, 301, 451, 646
PleI	GAGTC	4 cut(s)	176, 284, 334, 678
PpsI	GAGTC	4 cut(s)	176, 284, 334, 678
Ppu21I	YACGTR	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	3 cut(s)	20, 434, 612
RsaNI	GTAC	3 cut(s)	19, 433, 611
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	782
SaqAI	TTAA	4 cut(s)	80, 170, 467, 713
SatI	GCNGC	5 cut(s)	103, 118, 300, 450, 645
Sau3AI	GATC	3 cut(s)	52, 577, 625
ScaI	AGTACT	1 cut(s)	612
SchI	GAGTC	4 cut(s)	176, 285, 335, 678
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	2 cut(s)	552, 782
SfaNI	GCATC	2 cut(s)	656, 723
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	3 cut(s)	79, 323, 475
SmoI	CTYRAG	3 cut(s)	79, 323, 475
Sse9I	AATT	5 cut(s)	228, 392, 407, 553, 662
SsiI	CCGC	4 cut(s)	105, 398, 598, 736
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	67
TasI	AATT	5 cut(s)	228, 392, 407, 553, 662
TatI	WGTACW	2 cut(s)	18, 610
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	4 cut(s)	80, 170, 467, 713
Tru9I	TTAA	4 cut(s)	80, 170, 467, 713
TscAI	CASTG	2 cut(s)	336, 389
TseFI	GTSAC	2 cut(s)	327, 344
TseI	GCWGC	5 cut(s)	102, 117, 299, 449, 644
Tsp45I	GTSAC	2 cut(s)	327, 344
TspDTI	ATGAA	7 cut(s)	17, 23, 419, 543, 548, 734, 762
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	2 cut(s)	336, 389
Van91I	CCANNNNNTGG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	79
XapI	RAATTY	3 cut(s)	228, 392, 662
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	1 cut(s)	204
ZrmI	AGTACT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.