Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

47708236 .. 47708562

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTGGGATCGTCTTGGTCTTGTTGTAGGGGTTCATTCTCCCAGGTGGACGCCGACGGAGGTGAGGTTGTCGTCGACGATGGATGCAACAAGTTGTCTGGAGGCGGCGATGCAAGAGTGGCTGTGGCCAGGGTTTTTCCTAATTGGGCCTCCAGCTGGGAGGTTTTGGATGTGTGCCTCTCTGTGGGCTTTAGGATTGGGTGGCTTCGGGCCCAAAAGGCCTTTAGGGCTGTCTTGTCCTCCTGCTGGGATGATCGTGGTTGGGCTTCTTGCTTTGGGATCTCTAAGGTTGGGCTTCACATATGTGGTGGTGTATGCGGGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.71

Weight (kDa)

8.63

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	2 cut(s)	104, 317
AclWI	GGATC	2 cut(s)	15, 286
AcoI	YGGCCR	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	155, 183, 245
AjnI	CCWGG	2 cut(s)	41, 127
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	2 cut(s)	15, 286
AoxI	GGCC	4 cut(s)	125, 146, 209, 218
ApaI	GGGCCC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	146, 209, 210
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	213
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	43, 129
BglI	GCCNNNNNGGC	2 cut(s)	217, 226
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	43, 129
BmgT120I	GGNCC	3 cut(s)	146, 209, 210
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	43, 129
BmsI	GCATC	2 cut(s)	73, 99
BpmI	CTGGAG	2 cut(s)	119, 135
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	41, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 183, 245
BseBI	CCWGG	2 cut(s)	43, 129
BseDI	CCNNGG	2 cut(s)	41, 128
BseGI	GGATG	3 cut(s)	88, 174, 255
BseLI	CCNNNNNNNGG	3 cut(s)	155, 183, 245
BseSI	GKGCMC	1 cut(s)	213
BseYI	CCCAGC	2 cut(s)	155, 245
BshFI	GGCC	4 cut(s)	127, 148, 211, 220
BslI	CCNNNNNNNGG	3 cut(s)	155, 183, 245
BsnI	GGCC	4 cut(s)	127, 148, 211, 220
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	7, 252, 278
BspACI	CCGC	2 cut(s)	104, 317
BspANI	GGCC	4 cut(s)	127, 148, 211, 220
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	15, 286
BssECI	CCNNGG	2 cut(s)	41, 128
BssMI	GATC	3 cut(s)	7, 252, 278
BssNI	GRCGYC	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	43, 129
BstACI	GRCGYC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	88, 174, 255
BstKTI	GATC	3 cut(s)	10, 255, 281
BstMBI	GATC	3 cut(s)	7, 252, 278
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 217, 226
BstNI	CCWGG	2 cut(s)	43, 129
BstSCI	CCNGG	2 cut(s)	41, 127
BstSLI	GKGCMC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	127, 148, 211, 220
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	88, 174, 255
Cac8I	GCNNGC	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	146, 209, 210
CseI	GACGC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	3 cut(s)	9, 254, 280
DpnII	GATC	3 cut(s)	7, 252, 278
EaeI	YGGCCR	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	41, 127
EcoT38I	GRGCYC	1 cut(s)	213
FaiI	YATR	3 cut(s)	301, 303, 315
FauI	CCCGC	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	95, 181, 262
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	2 cut(s)	159, 249
GsuI	CTGGAG	2 cut(s)	119, 135
HaeIII	GGCC	4 cut(s)	127, 148, 211, 220
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	48, 75
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	2 cut(s)	48, 75
Hpy99I	CGWCG	3 cut(s)	58, 76, 79
HpyCH4V	TGCA	2 cut(s)	86, 112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 217, 226
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	7, 252, 278
LweI	GCATC	2 cut(s)	73, 99
MalI	GATC	3 cut(s)	9, 254, 280
MboI	GATC	3 cut(s)	7, 252, 278
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	127
MnlI	CCTC	7 cut(s)	52, 57, 94, 153, 159, 187, 249
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	43, 129
MvaI	CCWGG	2 cut(s)	43, 129
MwoI	GCNNNNNNNGC	3 cut(s)	118, 217, 226
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	3 cut(s)	7, 252, 278
NlaIV	GGNNCC	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	41, 127
PspFI	CCCAGC	2 cut(s)	155, 245
PspGI	CCWGG	2 cut(s)	41, 127
PspN4I	GGNNCC	1 cut(s)	211
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	3 cut(s)	146, 209, 210
PsuI	RGATCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	73
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	7, 252, 278
Sau96I	GGNCC	3 cut(s)	146, 209, 210
ScrFI	CCNGG	2 cut(s)	43, 129
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	47, 63, 68, 157, 164, 290
SfaNI	GCATC	2 cut(s)	73, 99
SfiI	GGCCNNNNNGGCC	1 cut(s)	217
SgrDI	CGTCGACG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	104, 317
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	41, 127
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	141
TauI	GCSGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.