Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Reverse (-)

1188853 .. 1195370

Gene Structure 6518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01910.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCATATTCCTGTTGGTTATCGATCAAGGATATACACAGTGGTTGGTGTGCTGTTACAAATGGACAAGGGTTTTCCTGTAAATTCATTAGCCATGTACCCACCTATATGAAGATCAGCTGGCTCATTTCTGTGTTATTTCAGACTGAAAATAATCTCTTTGTTACAAAGATGAACAAGAAATTCAACTTTTGCAATTGGGGAGATATGGGGAAAGATCTCACTTTACATTTATTCATGAGCTTAAGCATCGTGGATGTTATTCGCTGCGGCAGTGTTTGCCGCTCTTGGAGGGAAGCCTCTTCTGATACAGAACTTTGGAAGAATATAGACTTAACTAAGGTGGACTCTTTAATCGTTCTTCAAACTTGGTCAGACCATATTGCTATGGGAACCATGAATGCTATTTTCAGACGTGGTGGCGATGTATCTTGTTTGATATTTAACTACTACTTTCACATGAGGGATCATTACTTGATCCATGTTTCTAAAAGTATGCCGAAACTAAAAAGACTAGTCCTACCAGCACAGTACAGAGTATTAAAAGTGGCTCGATTTGAAGCTGCTTTGAAGAACTGGCCAGAACTTGAGTCACTTACCATTCCATGCAACTTTCCTGTGGAAATCATGGAAGTGATTGGTAAGCACTGTAAAAAATTCTCTGCGATGAAACTGATGTGTAATTTTTATGAGAACCACGCAGAAGCAGTTGCTGCCTACCTACCAAACTTGAAGGTCTTGAGCCTTAGGTGCGCTGACAAAGGAGCTGTACTTCACATATTGAAAGAAATGAAGCATTTGCAAGTGCTCAATTTATCTCACTCATACATTGTGAATCACTCTCCTACACTAGATCGCCGCATGGTAGTACTCCGTGAACTTGATCTGCAGGTCACTGAACCAGCATCAAGGCTGGAGAGATTTATTTACTGTCGTAGCAGACTCTACTGCAACACTTGCAGACTTCAGTTAAGCTTGAATAGAGTGCTGATACGGTGCAGATATGAAGAACGAGTTTGGAGAATGGATGAGGTGAGCTCGCTGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

351

Amino Acids

40.78

Weight (kDa)

9.15

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 51	8.5e-06	F-box domain
F-box-like	PF12937	16 - 55	3e-10	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	880
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	3 cut(s)	270, 283, 859
AclWI	GGATC	2 cut(s)	472, 474
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	3 cut(s)	83, 182, 656
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	4 cut(s)	99, 533, 771, 870
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	187, 365, 560, 571, 733, 784, 979
AhlI	ACTAGT	1 cut(s)	514
AjiI	CACGTC	1 cut(s)	416
AluBI	AGCT	6 cut(s)	120, 243, 563, 767, 975, 1038
AluI	AGCT	6 cut(s)	120, 243, 563, 767, 975, 1038
Alw21I	GWGCWC	2 cut(s)	810, 1040
AlwI	GGATC	2 cut(s)	472, 474
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	3 cut(s)	267, 563, 713
ApoI	RAATTY	3 cut(s)	83, 182, 656
AspLEI	GCGC	1 cut(s)	755
AsuHPI	GGTGA	1 cut(s)	1045
AxyI	CCTNAGG	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	1040
Bbv12I	GWGCWC	2 cut(s)	810, 1040
BbvI	GCAGC	3 cut(s)	254, 550, 700
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	2 cut(s)	515, 851
BfmI	CTRYAG	1 cut(s)	887
BfrI	CTTAAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	6 cut(s)	268, 271, 283, 564, 714, 859
BlsI	GCNGC	6 cut(s)	269, 272, 284, 565, 715, 860
BmcAI	AGTACT	1 cut(s)	870
BmgBI	CACGTC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	2 cut(s)	258, 914
BplI	GAGNNNNNCTC	1 cut(s)	1022
BpmI	CTGGAG	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	608, 760
Bsa29I	ATCGAT	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	581
Bse21I	CCTNAGG	1 cut(s)	746
BseCI	ATCGAT	1 cut(s)	23
BseGI	GGATG	2 cut(s)	262, 1033
BseNI	ACTGG	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	254, 550, 700
BsgI	GTGCAG	1 cut(s)	1018
BshFI	GGCC	1 cut(s)	580
BshVI	ATCGAT	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	810, 1040
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	810, 1040
Bsp143I	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
BspACI	CCGC	3 cut(s)	270, 283, 859
BspANI	GGCC	1 cut(s)	580
BspDI	ATCGAT	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	891
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	2 cut(s)	472, 474
BspTI	CTTAAG	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	581
BssMI	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
Bst4CI	ACNGT	5 cut(s)	41, 531, 650, 932, 996
Bst6I	CTCTTC	1 cut(s)	307
BstAFI	CTTAAG	1 cut(s)	244
BstAPI	GCANNNNNTGC	3 cut(s)	279, 713, 957
BstC8I	GCNNGC	3 cut(s)	122, 1040, 1044
BstDEI	CTNAG	2 cut(s)	339, 746
BstF5I	GGATG	2 cut(s)	262, 1033
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	7 cut(s)	27, 117, 220, 469, 480, 856, 886
BstMBI	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	279, 713, 750, 957
BstSFI	CTRYAG	1 cut(s)	887
BstV1I	GCAGC	3 cut(s)	254, 550, 700
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	580
BsuTUI	ATCGAT	1 cut(s)	23
BtgZI	GCGATG	2 cut(s)	438, 680
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	262, 1033
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	4 cut(s)	46, 280, 646, 894
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	122, 1040, 1044
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	755
ClaI	ATCGAT	1 cut(s)	23
Csp6I	GTAC	4 cut(s)	98, 532, 770, 869
CviAII	CATG	8 cut(s)	95, 238, 397, 460, 482, 606, 628, 862
CviQI	GTAC	4 cut(s)	98, 532, 770, 869
DdeI	CTNAG	2 cut(s)	339, 746
DpnI	GATC	7 cut(s)	26, 116, 219, 468, 479, 855, 885
DpnII	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
EaeI	YGGCCR	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	1038
Eco24I	GRGCYC	1 cut(s)	1040
Eco53kI	GAGCTC	1 cut(s)	1038
Eco57I	CTGAAG	1 cut(s)	950
Eco81I	CCTNAGG	1 cut(s)	746
EcoICRI	GAGCTC	1 cut(s)	1038
EcoT38I	GRGCYC	1 cut(s)	1040
FaeI	CATG	8 cut(s)	98, 241, 400, 463, 485, 609, 631, 865
FatI	CATG	8 cut(s)	94, 237, 396, 459, 481, 605, 627, 861
Fnu4HI	GCNGC	6 cut(s)	268, 271, 283, 564, 714, 859
FokI	GGATG	2 cut(s)	269, 1040
FriOI	GRGCYC	1 cut(s)	1040
Fsp4HI	GCNGC	6 cut(s)	268, 271, 283, 564, 714, 859
FspBI	CTAG	2 cut(s)	515, 851
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	6 cut(s)	268, 271, 283, 564, 714, 859
GsuI	CTGGAG	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	580
HhaI	GCGC	1 cut(s)	755
Hin1II	CATG	8 cut(s)	98, 241, 400, 463, 485, 609, 631, 865
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	4 cut(s)	347, 590, 835, 942
HphI	GGTGA	1 cut(s)	1045
Hpy166II	GTNNAC	2 cut(s)	346, 878
Hpy188I	TCNGA	4 cut(s)	144, 307, 376, 413
Hpy188III	TCNNGA	2 cut(s)	238, 739
Hpy8I	GTNNAC	2 cut(s)	346, 878
HpyAV	CCTTC	1 cut(s)	727
HpyCH4III	ACNGT	5 cut(s)	41, 531, 650, 932, 996
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	7 cut(s)	195, 609, 802, 889, 951, 960, 999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	279, 713, 750, 957
HpyF3I	CTNAG	2 cut(s)	339, 746
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	8 cut(s)	98, 241, 400, 463, 485, 609, 631, 865
HspAI	GCGC	1 cut(s)	753
Kzo9I	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	3 cut(s)	254, 550, 700
LweI	GCATC	2 cut(s)	258, 914
MaeI	CTAG	2 cut(s)	515, 851
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	4 cut(s)	55, 163, 591, 892
MalI	GATC	7 cut(s)	26, 116, 219, 468, 479, 855, 885
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
MboII	GAAGA	6 cut(s)	124, 294, 334, 353, 583, 1019
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	810, 1040
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	6 cut(s)	83, 182, 196, 656, 682, 811
MluNI	TGGCCA	1 cut(s)	580
MlyI	GAGTC	3 cut(s)	341, 599, 936
MnlI	CCTC	4 cut(s)	285, 310, 456, 1024
Mox20I	TGGCCA	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	6 cut(s)	245, 335, 353, 444, 542, 971
MslI	CAYNNNNRTG	3 cut(s)	107, 131, 632
Msp20I	TGGCCA	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	4 cut(s)	279, 713, 750, 957
NdeII	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
NlaIII	CATG	8 cut(s)	98, 241, 400, 463, 485, 609, 631, 865
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	591, 892
PagI	TCATGA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	835
PkrI	GCNGC	6 cut(s)	269, 272, 284, 565, 715, 860
PleI	GAGTC	3 cut(s)	341, 598, 936
PpsI	GAGTC	3 cut(s)	341, 598, 936
Psp124BI	GAGCTC	1 cut(s)	1040
PspN4I	GGNNCC	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	891
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	120
RsaI	GTAC	4 cut(s)	99, 533, 771, 870
RsaNI	GTAC	4 cut(s)	98, 532, 770, 869
RseI	CAYNNNNRTG	3 cut(s)	107, 131, 632
SacI	GAGCTC	1 cut(s)	1040
SaqAI	TTAA	6 cut(s)	245, 335, 353, 444, 542, 971
SatI	GCNGC	6 cut(s)	268, 271, 283, 564, 714, 859
Sau3AI	GATC	7 cut(s)	24, 114, 217, 466, 477, 853, 883
ScaI	AGTACT	1 cut(s)	870
SchI	GAGTC	3 cut(s)	341, 599, 936
SduI	GDGCHC	2 cut(s)	810, 1040
SfaNI	GCATC	2 cut(s)	258, 914
SfcI	CTRYAG	1 cut(s)	887
SmiMI	CAYNNNNRTG	3 cut(s)	107, 131, 632
SmlI	CTYRAG	3 cut(s)	244, 587, 739
SmoI	CTYRAG	3 cut(s)	244, 587, 739
SpeI	ACTAGT	1 cut(s)	514
Sse9I	AATT	6 cut(s)	83, 182, 196, 656, 682, 811
SsiI	CCGC	3 cut(s)	270, 283, 859
SspMI	CTAG	2 cut(s)	515, 851
SstI	GAGCTC	1 cut(s)	1040
TaaI	ACNGT	5 cut(s)	41, 531, 650, 932, 996
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	23, 553
TasI	AATT	6 cut(s)	83, 182, 196, 656, 682, 811
TatI	WGTACW	3 cut(s)	531, 769, 868
TauI	GCSGC	3 cut(s)	273, 285, 861
TfiI	GAWTC	1 cut(s)	835
Tru1I	TTAA	6 cut(s)	245, 335, 353, 444, 542, 971
Tru9I	TTAA	6 cut(s)	245, 335, 353, 444, 542, 971
TscAI	CASTG	4 cut(s)	46, 280, 653, 901
TseFI	GTSAC	2 cut(s)	591, 892
TseI	GCWGC	3 cut(s)	267, 563, 713
Tsp45I	GTSAC	2 cut(s)	591, 892
TspDTI	ATGAA	8 cut(s)	76, 125, 188, 226, 413, 683, 806, 1020
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	4 cut(s)	46, 280, 653, 901
Vha464I	CTTAAG	1 cut(s)	244
XapI	RAATTY	3 cut(s)	83, 182, 656
XspI	CTAG	2 cut(s)	515, 851
ZrmI	AGTACT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.