RLG00000003855

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004535
Physical Location & Seq
Reverse (-)
53569793 .. 53570224
432 bp
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UTR
Exon/CDS
Intron
RLM00000003855

Sequence Viewer

Length: 432 bp
ATGGAGGTGATTGGTAAGCACTGTAATAAATTCGCGGAGATGAAATTGATGTGTGATATTTATGCGGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGCGCTGAGGTCTCCAGGGGAGCTGTGCTTCACATACTGAATGAAATGAATCATTTGCAATTGCTCAGTTTATCTCACTCCTACATTTTGGACCACGCTCCAACACCAGACCTCCGCATAGTAGTACTACGTGAAGTTGATCAGGTGGTCATTGAAGCAGCATCACGGCTGAAGAGATTTCTTTTCTGTCGTAGCAGACTCTACTGCAACACTTTCAGGCTTCAGTTAAGTATGAATGGAGTGCTGATGCAGTGCAGATATGAAGAACGAGTTTGGAGAATAAATGAGGTGAGCTCACTTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

144

Amino Acids

16.55

Weight (kDa)

8.24

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 26 - 109 1e-05 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 35, 65, 238
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 2 cut(s) 314, 329
AfaI GTAC 2 cut(s) 71, 249
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 2 cut(s) 146, 417
AluI AGCT 2 cut(s) 146, 417
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 86, 281
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 19, 424
AvaII GGWCC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 119
BanII GRGCYC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 419
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 73, 293
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 139
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 2 cut(s) 87, 282
BlsI GCNGC 2 cut(s) 88, 283
BmcAI AGTACT 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 293, 360
BplI GAGNNNNNCTC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bse21I CCTNAGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 120, 202
BseXI GCAGC 2 cut(s) 73, 293
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 35, 65, 238
BspCNI CTCAG 2 cut(s) 121, 201
BspFNI CGCG 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 119, 129, 188
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 71, 86, 123
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 73, 293
Bsu36I CCTNAGG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 2 cut(s) 19, 380
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 70, 248
CviJI RGCY 5 cut(s) 117, 146, 292, 343, 417
CviKI_1 RGCY 5 cut(s) 117, 146, 292, 343, 417
CviQI GTAC 2 cut(s) 70, 248
DdeI CTNAG 3 cut(s) 119, 129, 188
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 419
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 2 cut(s) 314, 329
Eco81I CCTNAGG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 419
FaiI YATR 6 cut(s) 63, 95, 158, 242, 356, 384
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 87, 282
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 87, 282
GlaI GCGC 1 cut(s) 127
GluI GCNGC 2 cut(s) 87, 282
GsuI CTGGAG 1 cut(s) 121
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 2 cut(s) 172, 321
HphI GGTGA 2 cut(s) 19, 424
Hpy188III TCNNGA 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 4 cut(s) 181, 330, 373, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 86, 123
HpyF3I CTNAG 3 cut(s) 119, 129, 188
HpySE526I ACGT 1 cut(s) 253
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 143, 226
LpnPI CCDG 5 cut(s) 124, 151, 243, 251, 325
Lsp1109I GCAGC 2 cut(s) 73, 293
LweI GCATC 2 cut(s) 293, 360
MaeII ACGT 1 cut(s) 253
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 307, 398
MfeI CAATTG 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 3 cut(s) 29, 44, 182
MlyI GAGTC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 4 cut(s) 70, 124, 245, 403
MseI TTAA 2 cut(s) 104, 350
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 71, 86, 123
NdeII GATC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 88, 283
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Ppu21I YACGTR 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspPI GGNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 71, 249
RsaNI GTAC 2 cut(s) 70, 248
SacI GAGCTC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 104, 350
SatI GCNGC 2 cut(s) 87, 282
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 249
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 2 cut(s) 293, 360
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 3 cut(s) 29, 44, 182
SsiI CCGC 3 cut(s) 35, 65, 238
SstI GAGCTC 1 cut(s) 419
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 256
TasI AATT 3 cut(s) 29, 44, 182
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 2 cut(s) 104, 350
Tru9I TTAA 2 cut(s) 104, 350
TscAI CASTG 2 cut(s) 26, 380
TseI GCWGC 2 cut(s) 86, 281
TspDTI ATGAA 5 cut(s) 56, 180, 185, 371, 399
TspRI CASTG 2 cut(s) 26, 380
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.