Rroxscaffold_3G00257600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004535
Physical Location & Seq
Reverse (-)
51922484 .. 51939636
17153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257600.1

Sequence Viewer

Length: 402 bp
ATGAACGCGATGCGATTCATAAACGATGAACTGGCTGTAGAGAGGAAAATCCAGTTAGGGAAGCGGGGAATCCTGCAGGTCGGAGAATCGGGGAGATTTTCAAGAATCAATAAAAAGTCTGTTGCTAAAATCAATATTTTTAAGAAATCAATAGCAGTACGTACAATCTCTTCGAATACAATGATTAACAAGAAATCCAAATACAGAAACTGGGGTGATATGGAACGTACAAGGCATACTGCTCAAGATCTTTATGGCTCTAAATGTCATGGATTTGGTTGGCGTGTTTCGCTTGTCCGTAGCACATGGCATTCGGTTTGTCGTGAACCCCGCATGTGGGAGACCCTAAATATGAGTCTGCTTGGTTCCGAAACTCTTTCTTACTCCTCAAGAAGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

10.65

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccII CGCG 1 cut(s) 8
AciI CCGC 2 cut(s) 64, 331
AfaI GTAC 3 cut(s) 159, 163, 229
AfiI CCNNNNNNNGG 2 cut(s) 336, 337
AgsI TTSAA 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 173
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BcoDI GTCTC 1 cut(s) 335
BfmI CTRYAG 2 cut(s) 36, 74
BfuAI ACCTGC 1 cut(s) 67
BglII AGATCT 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 367
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 2 cut(s) 228, 373
BsaAI YACGTR 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 337
Bse1I ACTGG 3 cut(s) 36, 52, 215
BseLI CCNNNNNNNGG 2 cut(s) 336, 337
BseNI ACTGG 3 cut(s) 36, 52, 215
BseRI GAGGAG 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 336, 337
BsmAI GTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 173
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 64, 331
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 367
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 335
BsrI ACTGG 3 cut(s) 36, 52, 215
BssMI GATC 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 173
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 337
BstSFI CTRYAG 2 cut(s) 36, 74
BstSNI TACGTA 1 cut(s) 161
BstUI CGCG 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BtgZI GCGATG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 67
CaiI CAGNNNCTG 1 cut(s) 210
Csp6I GTAC 3 cut(s) 158, 162, 228
CviAII CATG 3 cut(s) 269, 306, 334
CviJI RGCY 2 cut(s) 35, 258
CviKI_1 RGCY 2 cut(s) 35, 258
CviQI GTAC 3 cut(s) 158, 162, 228
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco105I TACGTA 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 335
FaeI CATG 3 cut(s) 272, 309, 337
FaiI YATR 9 cut(s) 20, 221, 237, 255, 270, 307, 335, 353, 400
FatI CATG 3 cut(s) 268, 305, 333
FauI CCCGC 2 cut(s) 57, 338
Hin1II CATG 3 cut(s) 272, 309, 337
HinfI GANTC 5 cut(s) 15, 69, 86, 105, 355
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 83, 370
Hpy188III TCNNGA 4 cut(s) 102, 245, 323, 390
Hpy8I GTNNAC 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 160, 226
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpySE526I ACGT 2 cut(s) 160, 226
Hsp92II CATG 3 cut(s) 272, 309, 337
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 17, 62, 65, 86, 196
MaeII ACGT 2 cut(s) 160, 226
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 162
MflI RGATCY 1 cut(s) 247
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 36, 397
MseI TTAA 2 cut(s) 141, 186
Mva1269I GAATGC 1 cut(s) 310
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 272, 309, 337
NlaIV GGNNCC 1 cut(s) 367
NspI RCATGY 1 cut(s) 337
NspV TTCGAA 1 cut(s) 173
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 4 cut(s) 15, 69, 86, 105
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 367
PstI CTGCAG 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 3 cut(s) 159, 163, 229
RsaNI GTAC 3 cut(s) 158, 162, 228
SaqAI TTAA 2 cut(s) 141, 186
Sau3AI GATC 1 cut(s) 247
SbfI CCTGCAGG 1 cut(s) 78
SchI GAGTC 1 cut(s) 364
SdaI CCTGCAGG 1 cut(s) 78
SetI ASST 3 cut(s) 81, 163, 229
SfcI CTRYAG 2 cut(s) 36, 74
SfuI TTCGAA 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 243, 388
SmoI CTYRAG 2 cut(s) 243, 388
SnaBI TACGTA 1 cut(s) 161
Sse8387I CCTGCAGG 1 cut(s) 78
SsiI CCGC 2 cut(s) 64, 331
SspI AATATT 1 cut(s) 136
TaiI ACGT 2 cut(s) 163, 229
TaqI TCGA 1 cut(s) 173
TfiI GAWTC 4 cut(s) 15, 69, 86, 105
Tru1I TTAA 2 cut(s) 141, 186
Tru9I TTAA 2 cut(s) 141, 186
TspDTI ATGAA 3 cut(s) 7, 17, 42
TspGWI ACGGA 1 cut(s) 287
XceI RCATGY 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.