Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Reverse (-)

51913852 .. 51914283

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTGAAGTTGATCGGTGCTCATTGCAAGAATTTCTCTGAACTCAAACTTATGTGCCCTTTTGTGGTGGACTTTGGCAAGTCCATTGCTGCCTATATCCTGAACTTCAGTGTTTTAAGTCTTCAGGACAGCTTGGTTGAGAAGGAAGCCTTGGTTTACATACTGAACAACATGAAAAATTTGCGAGTGTTGAACTTGTGTCACTGCCTTCTTGTGGATGATGGTCTTCCAGCACCAGGCTATGCTTATGTAGCGTGTGCCCTTGACAACTCTATCACTGAATGGGCCTCAGGGACGAAGAAGTTATATTTTTGTAATTCAGACTACTGTCGTATCTGCCAGCTCATGTTTGTTACTGAAGGGAGCTTGGGGTGGTCCGACATTGGAATTTGGCGAAAGGACATAGTGAGTACACTTGCAGCAGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

6.06

Isoelectric Point (pI)

23.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	31, 178, 387
AcuI	CTGAAG	3 cut(s)	91, 107, 378
AfaI	GTAC	2 cut(s)	412, 426
AfiI	CCNNNNNNNGG	3 cut(s)	64, 214, 236
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	3 cut(s)	132, 343, 366
AluI	AGCT	3 cut(s)	132, 343, 366
Alw21I	GWGCWC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	89, 419
ApoI	RAATTY	3 cut(s)	31, 178, 387
AspS9I	GGNCC	2 cut(s)	285, 375
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	375
AxyI	CCTNAGG	1 cut(s)	289
BaeGI	GKGCMC	2 cut(s)	59, 262
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BbsI	GAAGAC	2 cut(s)	113, 218
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	90, 420
BlsI	GCNGC	2 cut(s)	91, 421
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	285, 375
BmrFI	CCNGG	1 cut(s)	237
BoxI	GACNNNNGTC	1 cut(s)	327
BpiI	GAAGAC	2 cut(s)	113, 218
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 214, 236
Bse21I	CCTNAGG	1 cut(s)	289
Bse3DI	GCAATG	2 cut(s)	22, 84
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	3 cut(s)	64, 214, 236
BseMI	GCAATG	2 cut(s)	22, 84
BseMII	CTCAG	1 cut(s)	303
BseSI	GKGCMC	2 cut(s)	59, 262
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	64, 214, 236
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	22, 59, 262
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	22, 84
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	237
BstPAI	GACNNNNGTC	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	235
BstSLI	GKGCMC	2 cut(s)	59, 262
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	2 cut(s)	113, 218
Bsu36I	CCTNAGG	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	115, 202, 276
Cac8I	GCNNGC	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	285, 375
Csp6I	GTAC	2 cut(s)	411, 425
CviAII	CATG	2 cut(s)	172, 346
CviJI	RGCY	6 cut(s)	132, 149, 240, 287, 343, 366
CviKI_1	RGCY	6 cut(s)	132, 149, 240, 287, 343, 366
CviQI	GTAC	2 cut(s)	411, 425
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	3 cut(s)	91, 107, 378
Eco81I	CCTNAGG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	175, 349
FaiI	YATR	9 cut(s)	53, 96, 161, 173, 243, 249, 307, 347, 404
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	171, 345
Fnu4HI	GCNGC	2 cut(s)	90, 420
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	90, 420
GluI	GCNGC	2 cut(s)	90, 420
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	175, 349
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	70, 157, 413
Hpy188I	TCNGA	3 cut(s)	40, 322, 379
Hpy188III	TCNNGA	2 cut(s)	100, 125
Hpy8I	GTNNAC	3 cut(s)	70, 157, 413
HpyAV	CCTTC	3 cut(s)	136, 218, 353
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	27, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	289
Hsp92II	CATG	2 cut(s)	175, 349
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	7 cut(s)	110, 113, 222, 243, 249, 276, 353
Lsp1109I	GCAGC	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	200, 352
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	113, 218, 310
MhlI	GDGCHC	3 cut(s)	22, 59, 262
MluCI	AATT	4 cut(s)	31, 178, 316, 387
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	1 cut(s)	298
MseI	TTAA	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	175, 349
NmuCI	GTSAC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	91, 421
PshAI	GACNNNNGTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	285, 375
RsaI	GTAC	2 cut(s)	412, 426
RsaNI	GTAC	2 cut(s)	411, 425
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	90, 420
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	285, 375
ScaI	AGTACT	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	3 cut(s)	22, 59, 262
SetI	ASST	3 cut(s)	134, 345, 368
SinI	GGWCC	1 cut(s)	375
Sse9I	AATT	4 cut(s)	31, 178, 316, 387
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	329
TasI	AATT	4 cut(s)	31, 178, 316, 387
TatI	WGTACW	2 cut(s)	410, 424
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	3 cut(s)	115, 209, 283
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	89, 419
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	115, 209, 283
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	3 cut(s)	31, 178, 387
ZrmI	AGTACT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.