Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

13757341 .. 13759860

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG175700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGGTGATTGGTAAGCACTGTAATAAATTCGCGGAGATGAAATTGATGTGTGATTTTTATGAGGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGCGCTGAAGTGTCCAGGGGAGCTGTGCTTCACATACTGAATGAAATGAATCATTTGCAAGTGCTCAATTTATCTCACTCCTACATTGTGGACCACGCTCCAACACCAAACCGCCGCATAGTAGTACTCCGTGAACTTGATCAGGTGGTCATTGAAGCAGCATCATGGCTGAAGAAATTTCTTTTCTGTCGTAGCAGACTCTACTGCAACACTTGCAGGCTTCAGTTAAGTATGAACGGAGTGCTGATGCGGTGCAGATATGAAGAACGAGTTTGGAGAATGGATGAGGAACGTCTTGGTCCTAAACCCGGGTGGACGCAGGCGGAGGTGAGGTTGCCGTCGGCGATGGATGCAGCAAGATGTTTGGAGGCAGCGATGCAATGGCGGATGCTGCTAGGGTTTTTCCCAATTGGGCTTCCAACTGGGTTGCTCTGGATGTGGACCTCTCTGTGGGCTTTAGGATTGGGTTACTTCATGCCCAAAAGGCCTTTAGGGCTGCCTTGTCCTCCTGCTGAGTTGACTGTTGTTAGGCTCCTTGTTTTGGGCTCCCCGAGGTTAGGCTTCACAGAGGTGAAGGTGAATGCGGGCTGGCATTTGACGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

242

Amino Acids

27.75

Weight (kDa)

8.88

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	7 cut(s)	35, 235, 238, 373, 446, 508, 707
AcsI	RAATTY	2 cut(s)	29, 299
AcuI	CTGAAG	3 cut(s)	150, 314, 329
AfaI	GTAC	2 cut(s)	71, 249
AfiI	CCNNNNNNNGG	4 cut(s)	431, 573, 664, 680
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	137
AleI	CACNNNNGTG	1 cut(s)	692
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	2 cut(s)	431, 673
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	6 cut(s)	86, 281, 476, 494, 514, 619
ApoI	RAATTY	2 cut(s)	29, 299
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	214, 422, 564
AsuC2I	CCSGG	2 cut(s)	432, 433
AsuHPI	GGTGA	4 cut(s)	19, 463, 706, 712
AvaI	CYCGRG	2 cut(s)	431, 673
AvaII	GGWCC	3 cut(s)	214, 422, 564
AxyI	CCTNAGG	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	6 cut(s)	73, 293, 488, 501, 506, 606
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	139
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	432, 433
BfaI	CTAG	1 cut(s)	518
BglI	GCCNNNNNGGC	2 cut(s)	607, 616
BisI	GCNGC	7 cut(s)	87, 238, 282, 477, 495, 515, 620
BlsI	GCNGC	7 cut(s)	88, 239, 283, 478, 496, 516, 621
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	3 cut(s)	139, 432, 433
Bme18I	GGWCC	3 cut(s)	214, 422, 564
BmeT110I	CYCGRG	2 cut(s)	431, 673
BmgT120I	GGNCC	3 cut(s)	214, 422, 564
BmiI	GGNNCC	2 cut(s)	656, 670
BmrFI	CCNGG	3 cut(s)	139, 432, 433
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	5 cut(s)	293, 360, 463, 489, 501
BmuI	ACTGGG	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	2 cut(s)	432, 433
BsaJI	CCNNGG	3 cut(s)	138, 431, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	431, 573, 664, 680
Bse1I	ACTGG	1 cut(s)	550
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	138, 431, 674
BseGI	GGATG	4 cut(s)	412, 478, 516, 564
BseLI	CCNNNNNNNGG	4 cut(s)	431, 573, 664, 680
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	6 cut(s)	73, 293, 488, 501, 506, 606
BsgI	GTGCAG	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	2 cut(s)	431, 673
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	4 cut(s)	431, 573, 664, 680
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	1 cut(s)	610
BsoBI	CYCGRG	2 cut(s)	431, 673
Bsp1286I	GDGCHC	2 cut(s)	189, 671
Bsp143I	GATC	1 cut(s)	262
BspACI	CCGC	7 cut(s)	35, 235, 238, 373, 446, 508, 707
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	656, 670
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	138, 431, 674
BssMI	GATC	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	23, 646, 724
BstAPI	GCANNNNNTGC	2 cut(s)	86, 336
BstC8I	GCNNGC	4 cut(s)	341, 444, 709, 713
BstDEI	CTNAG	2 cut(s)	119, 636
BstF5I	GGATG	4 cut(s)	412, 478, 516, 564
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 123, 336, 473, 514, 607, 616
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	137, 430, 431
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	6 cut(s)	73, 293, 488, 501, 506, 606
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	610
BtgZI	GCGATG	2 cut(s)	482, 512
BtsCI	GGATG	4 cut(s)	412, 478, 516, 564
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	341, 444, 709, 713
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	214, 422, 564
Cfr9I	CCCGGG	1 cut(s)	431
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	70, 248
CviAII	CATG	2 cut(s)	288, 598
CviQI	GTAC	2 cut(s)	70, 248
DdeI	CTNAG	2 cut(s)	119, 636
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
EciI	GGCGGA	2 cut(s)	461, 523
Eco147I	AGGCCT	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	671
Eco47I	GGWCC	3 cut(s)	214, 422, 564
Eco57I	CTGAAG	3 cut(s)	150, 314, 329
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	2 cut(s)	431, 673
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	671
FaeI	CATG	2 cut(s)	291, 601
FaiI	YATR	8 cut(s)	63, 95, 158, 242, 289, 356, 384, 599
FatI	CATG	2 cut(s)	287, 597
FauI	CCCGC	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	7 cut(s)	87, 238, 282, 477, 495, 515, 620
FokI	GGATG	4 cut(s)	419, 485, 523, 571
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	7 cut(s)	87, 238, 282, 477, 495, 515, 620
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	7 cut(s)	87, 238, 282, 477, 495, 515, 620
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	291, 601
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	172, 321
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	4 cut(s)	19, 463, 706, 712
Hpy166II	GTNNAC	5 cut(s)	214, 257, 438, 564, 642
Hpy188I	TCNGA	1 cut(s)	728
Hpy188III	TCNNGA	2 cut(s)	112, 556
Hpy8I	GTNNAC	5 cut(s)	214, 257, 438, 564, 642
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	3 cut(s)	23, 646, 724
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	181, 330, 339, 378, 476, 502
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 123, 336, 473, 514, 607, 616
HpyF3I	CTNAG	2 cut(s)	119, 636
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	291, 601
HspAI	GCGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	4 cut(s)	143, 226, 660, 674
Lsp1109I	GCAGC	6 cut(s)	73, 293, 488, 501, 506, 606
LweI	GCATC	5 cut(s)	293, 360, 463, 489, 501
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	307, 398
MfeI	CAATTG	1 cut(s)	531
MhlI	GDGCHC	2 cut(s)	189, 671
MluCI	AATT	5 cut(s)	29, 44, 190, 299, 531
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	2 cut(s)	248, 566
MseI	TTAA	2 cut(s)	104, 350
MslI	CAYNNNNRTG	1 cut(s)	692
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	3 cut(s)	139, 432, 433
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	7 cut(s)	86, 123, 336, 473, 514, 607, 616
NciI	CCSGG	2 cut(s)	432, 433
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	291, 601
NlaIV	GGNNCC	2 cut(s)	656, 670
OliI	CACNNNNGTG	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	610
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	7 cut(s)	88, 239, 283, 478, 496, 516, 621
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	656, 670
PspPI	GGNCC	3 cut(s)	214, 422, 564
PstNI	CAGNNNCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	71, 249
RsaNI	GTAC	2 cut(s)	70, 248
RseI	CAYNNNNRTG	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	104, 350
SatI	GCNGC	7 cut(s)	87, 238, 282, 477, 495, 515, 620
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	3 cut(s)	214, 422, 564
ScaI	AGTACT	1 cut(s)	249
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	3 cut(s)	139, 432, 433
SduI	GDGCHC	2 cut(s)	189, 671
SfaNI	GCATC	5 cut(s)	293, 360, 463, 489, 501
SinI	GGWCC	3 cut(s)	214, 422, 564
SmaI	CCCGGG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	29, 44, 190, 299, 531
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	7 cut(s)	35, 235, 238, 373, 446, 508, 707
SspMI	CTAG	1 cut(s)	518
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	3 cut(s)	137, 430, 431
TaaI	ACNGT	3 cut(s)	23, 646, 724
TaiI	ACGT	1 cut(s)	418
TasI	AATT	5 cut(s)	29, 44, 190, 299, 531
TatI	WGTACW	1 cut(s)	247
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	104, 350
Tru9I	TTAA	2 cut(s)	104, 350
TscAI	CASTG	1 cut(s)	26
TseI	GCWGC	6 cut(s)	86, 281, 476, 494, 514, 619
TspDTI	ATGAA	6 cut(s)	56, 180, 185, 371, 399, 586
TspGWI	ACGGA	2 cut(s)	242, 375
TspMI	CCCGGG	1 cut(s)	431
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	214, 422, 564
XapI	RAATTY	2 cut(s)	29, 299
XmaI	CCCGGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	518
ZrmI	AGTACT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.