Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004229.1

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Reverse (-)

1885 .. 5970

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004229.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

atgatggttacaggaaaaaatctctttgttatgaagatgaacaacaagtacaacttcagaaatcagggagagatggggaatgatctcatttcacgtatattcatgagcttaagtgtcatggatgtcattcgctcatgcggaagtgtttgctgctcttggagggaagtttcttccaataccagactttggaagactatatacttaactaaggtggactcagaaatatttcttcaatctaggtcaggccatattgctatgggaattttgaatgctgttttcagtcgtgtggctggatttgaagctgctttgaagaactggccacaacttgagtcactgaccattccatgtgactttcttgtggaaatcatggaggtgattggtaagcactgtaataaatccgcggagatgaaattgatgtgtgatttttatgaggagtacgcagaggcagttgctgcctacataccaaacttaaaggtcttgagccttagccttattttttctaactcagaagatatgaacgcgatgcgattcataaacgatgaactggctgtagagaggaaaatccagttagttcaagctcgtccttgggctccaaggctcgctcctctcggtacaatctcttcaaatacaatgattaacaagaaatccaaatacagaaactggggtgatatggaacaaggcatactgctcaagatcttcatggctctaaatgtcatggatttggttggctgcagtgtttctgctgtctgtagcacatggcattcagtttgttgtgaaccctgcatgtgggagaccctaaatatgagtgtgctggttccgaaactctttcttactcctcaagaagcacataatttctgtgatgaggagcacagaaacaaagttacgagattcttgaatacagcattaaaccttagccgtggaaagatatcttgcctgattttcaattactacatccctataacagatgagcaattgatccatgcttctgagagcggaattagctcgtgcgacgccgaggttcctctaaaccagaactttcacttaattacgacaataccactcaccctccatttagcttcaagctcgtccttgggctccaaggctcgctcctctcgatgctctataggcttgcaaacacagatcgatgcttcattcactgactactgcccctccattcttggaatcacttctcgtgacgaccttctctctctcacacatgaacttggcagatggttcctgtcacaaccttctcgcgctcactcacgaacttggcagatgactctctcttgtcataaccttctcacgcccactcgtgaacttggcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

442

Amino Acids

49.9

Weight (kDa)

7.49

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	993
AccII	CGCG	3 cut(s)	401, 521, 1254
AciI	CCGC	4 cut(s)	138, 399, 401, 993
AclWI	GGATC	1 cut(s)	970
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	1011
AfaI	GTAC	3 cut(s)	50, 437, 613
AfiI	CCNNNNNNNGG	2 cut(s)	186, 786
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	9 cut(s)	233, 268, 299, 310, 575, 624, 895, 943, 1080
AluBI	AGCT	6 cut(s)	108, 302, 578, 1002, 1076, 1083
AluI	AGCT	6 cut(s)	108, 302, 578, 1002, 1076, 1083
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	1 cut(s)	970
AlwNI	CAGNNNCTG	2 cut(s)	452, 660
AoxI	GGCC	2 cut(s)	244, 317
ApeKI	GCWGC	4 cut(s)	150, 302, 452, 729
ApoI	RAATTY	1 cut(s)	261
Asp700I	GAANNNNTTC	2 cut(s)	225, 1186
AspLEI	GCGC	1 cut(s)	1256
AsuHPI	GGTGA	3 cut(s)	385, 677, 1054
BalI	TGGCCA	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	592, 1097
BarI	GAAGNNNNNNTAC	4 cut(s)	182, 214, 604, 636
BauI	CACGAG	3 cut(s)	1003, 1191, 1311
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	4 cut(s)	137, 289, 439, 716
BccI	CCATC	2 cut(s)	67, 1224
BceAI	ACGGC	1 cut(s)	900
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	4 cut(s)	549, 730, 748, 1122
BfrI	CTTAAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	4 cut(s)	151, 303, 453, 730
BlsI	GCNGC	4 cut(s)	152, 304, 454, 731
BmiI	GGNNCC	5 cut(s)	591, 816, 1020, 1096, 1235
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	3 cut(s)	513, 1106, 1135
BmuI	ACTGGG	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	197
Bpu10I	CCTNAGC	2 cut(s)	485, 911
BpuEI	CTTGAG	4 cut(s)	347, 499, 674, 822
Bsa29I	ATCGAT	1 cut(s)	1143
BsaAI	YACGTR	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	1011
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	7 cut(s)	399, 584, 593, 916, 1014, 1089, 1098
BsaXI	ACNNNNNCTCC	4 cut(s)	1050, 1080, 1154, 1184
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 786
Bse1I	ACTGG	4 cut(s)	320, 549, 565, 665
BseCI	ATCGAT	1 cut(s)	1143
BseDI	CCNNGG	7 cut(s)	399, 584, 593, 916, 1014, 1089, 1098
BseGI	GGATG	2 cut(s)	127, 951
BseLI	CCNNNNNNNGG	2 cut(s)	186, 786
BseMII	CTCAG	3 cut(s)	231, 519, 978
BseNI	ACTGG	4 cut(s)	320, 549, 565, 665
BseRI	GAGGAG	5 cut(s)	446, 594, 825, 878, 1099
BseXI	GCAGC	4 cut(s)	137, 289, 439, 716
Bsh1236I	CGCG	3 cut(s)	401, 521, 1254
BshFI	GGCC	2 cut(s)	246, 319
BshVI	ATCGAT	1 cut(s)	1143
BsiHKAI	GWGCWC	1 cut(s)	870
BslI	CCNNNNNNNGG	2 cut(s)	186, 786
BsmAI	GTCTC	1 cut(s)	785
BsmI	GAATGC	2 cut(s)	274, 760
BsnI	GGCC	2 cut(s)	246, 319
Bso31I	GGTCTC	1 cut(s)	785
Bsp1286I	GDGCHC	3 cut(s)	592, 870, 1097
Bsp143I	GATC	4 cut(s)	82, 693, 975, 1140
BspACI	CCGC	4 cut(s)	138, 399, 401, 993
BspANI	GGCC	2 cut(s)	246, 319
BspCNI	CTCAG	3 cut(s)	230, 518, 979
BspDI	ATCGAT	1 cut(s)	1143
BspFNI	CGCG	3 cut(s)	401, 521, 1254
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	5 cut(s)	591, 816, 1020, 1096, 1235
BspMAI	CTGCAG	1 cut(s)	734
BspPI	GGATC	1 cut(s)	970
BspTI	CTTAAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	785
BsrBI	CCGCTC	1 cut(s)	993
BsrI	ACTGG	4 cut(s)	320, 549, 565, 665
BssECI	CCNNGG	7 cut(s)	399, 584, 593, 916, 1014, 1089, 1098
BssMI	GATC	4 cut(s)	82, 693, 975, 1140
BssNI	GRCGYC	1 cut(s)	1011
BssSI	CACGAG	3 cut(s)	1003, 1191, 1311
BssT1I	CCWWGG	4 cut(s)	584, 593, 1089, 1098
Bst2BI	CACGAG	3 cut(s)	1003, 1191, 1311
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	1011
BstAFI	CTTAAG	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	600, 1105, 1130
BstDEI	CTNAG	6 cut(s)	207, 217, 485, 505, 911, 987
BstDSI	CCRYGG	2 cut(s)	399, 916
BstF5I	GGATG	2 cut(s)	127, 951
BstFNI	CGCG	3 cut(s)	401, 521, 1254
BstHHI	GCGC	1 cut(s)	1256
BstKTI	GATC	4 cut(s)	85, 696, 978, 1143
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	4 cut(s)	82, 693, 975, 1140
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 999, 1125
BstNSI	RCATGY	1 cut(s)	787
BstSFI	CTRYAG	4 cut(s)	549, 730, 748, 1122
BstUI	CGCG	3 cut(s)	401, 521, 1254
BstV1I	GCAGC	4 cut(s)	137, 289, 439, 716
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
Bsu15I	ATCGAT	1 cut(s)	1143
BsuRI	GGCC	2 cut(s)	246, 319
BsuTUI	ATCGAT	1 cut(s)	1143
BtgI	CCRYGG	2 cut(s)	399, 916
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	127, 951
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	4 cut(s)	332, 385, 739, 1155
Cac8I	GCNNGC	3 cut(s)	600, 1105, 1130
CaiI	CAGNNNCTG	2 cut(s)	452, 660
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	1256
Cfr42I	CCGCGG	1 cut(s)	402
ClaI	ATCGAT	1 cut(s)	1143
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	3 cut(s)	49, 436, 612
CviQI	GTAC	3 cut(s)	49, 436, 612
DdeI	CTNAG	6 cut(s)	207, 217, 485, 505, 911, 987
DpnI	GATC	4 cut(s)	84, 695, 977, 1142
DpnII	GATC	4 cut(s)	82, 693, 975, 1140
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	625
Eco130I	CCWWGG	4 cut(s)	584, 593, 1089, 1098
Eco24I	GRGCYC	2 cut(s)	592, 1097
Eco31I	GGTCTC	1 cut(s)	785
Eco32I	GATATC	1 cut(s)	927
Eco57I	CTGAAG	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	927
EcoT14I	CCWWGG	4 cut(s)	584, 593, 1089, 1098
EcoT38I	GRGCYC	2 cut(s)	592, 1097
ErhI	CCWWGG	4 cut(s)	584, 593, 1089, 1098
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
Fnu4HI	GCNGC	4 cut(s)	151, 303, 453, 730
FokI	GGATG	2 cut(s)	134, 938
FriOI	GRGCYC	2 cut(s)	592, 1097
Fsp4HI	GCNGC	4 cut(s)	151, 303, 453, 730
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	1255
GluI	GCNGC	4 cut(s)	151, 303, 453, 730
HaeIII	GGCC	2 cut(s)	246, 319
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	1 cut(s)	1256
Hin1I	GRCGYC	1 cut(s)	1011
Hin6I	GCGC	1 cut(s)	1254
HinP1I	GCGC	1 cut(s)	1254
HinfI	GANTC	6 cut(s)	215, 329, 528, 888, 1182, 1279
HphI	GGTGA	3 cut(s)	385, 677, 1054
Hpy166II	GTNNAC	3 cut(s)	214, 776, 1316
Hpy188I	TCNGA	5 cut(s)	59, 220, 508, 819, 988
Hpy188III	TCNNGA	9 cut(s)	103, 478, 691, 839, 892, 1113, 1193, 1263, 1313
Hpy8I	GTNNAC	3 cut(s)	214, 776, 1316
Hpy99I	CGWCG	1 cut(s)	1013
HpyAV	CCTTC	3 cut(s)	1211, 1257, 1307
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	732, 783, 1132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 999, 1125
HpyF3I	CTNAG	6 cut(s)	207, 217, 485, 505, 911, 987
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	1011
HspAI	GCGC	1 cut(s)	1254
KspI	CCGCGG	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	82, 693, 975, 1140
LmnI	GCTCC	5 cut(s)	595, 607, 865, 1100, 1112
Lsp1109I	GCAGC	4 cut(s)	137, 289, 439, 716
LweI	GCATC	3 cut(s)	513, 1106, 1135
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	6 cut(s)	7, 330, 347, 880, 1193, 1239
MalI	GATC	4 cut(s)	84, 695, 977, 1142
MbiI	CCGCTC	1 cut(s)	993
MboI	GATC	4 cut(s)	82, 693, 975, 1140
MboII	GAAGA	8 cut(s)	46, 162, 202, 221, 322, 521, 612, 688
MfeI	CAATTG	1 cut(s)	971
MflI	RGATCY	1 cut(s)	693
MhlI	GDGCHC	3 cut(s)	592, 870, 1097
MlsI	TGGCCA	1 cut(s)	319
MluCI	AATT	7 cut(s)	261, 410, 850, 943, 971, 996, 1044
MluNI	TGGCCA	1 cut(s)	319
MlyI	GAGTC	3 cut(s)	209, 338, 1273
Mox20I	TGGCCA	1 cut(s)	319
MroXI	GAANNNNTTC	2 cut(s)	225, 1186
MscI	TGGCCA	1 cut(s)	319
MseI	TTAA	6 cut(s)	110, 203, 470, 636, 905, 1043
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	971
Mva1269I	GAATGC	2 cut(s)	274, 760
MvnI	CGCG	3 cut(s)	401, 521, 1254
MwoI	GCNNNNNNNGC	3 cut(s)	452, 999, 1125
NdeII	GATC	4 cut(s)	82, 693, 975, 1140
NlaIV	GGNNCC	5 cut(s)	591, 816, 1020, 1096, 1235
NmeAIII	GCCGAG	1 cut(s)	1039
NmuCI	GTSAC	4 cut(s)	330, 347, 1193, 1239
NspI	RCATGY	1 cut(s)	787
PagI	TCATGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	1111
PctI	GAATGC	2 cut(s)	274, 760
PdmI	GAANNNNTTC	2 cut(s)	225, 1186
PfeI	GAWTC	3 cut(s)	528, 888, 1182
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	152, 304, 454, 731
PleI	GAGTC	3 cut(s)	209, 337, 1273
PpsI	GAGTC	3 cut(s)	209, 337, 1273
Ppu21I	YACGTR	1 cut(s)	95
PspN4I	GGNNCC	5 cut(s)	591, 816, 1020, 1096, 1235
PsrI	GAACNNNNNNTAC	4 cut(s)	32, 64, 666, 698
PstI	CTGCAG	1 cut(s)	734
PstNI	CAGNNNCTG	2 cut(s)	452, 660
PsuI	RGATCY	1 cut(s)	693
RsaI	GTAC	3 cut(s)	50, 437, 613
RsaNI	GTAC	3 cut(s)	49, 436, 612
RseI	CAYNNNNRTG	1 cut(s)	371
SacII	CCGCGG	1 cut(s)	402
SaqAI	TTAA	6 cut(s)	110, 203, 470, 636, 905, 1043
SatI	GCNGC	4 cut(s)	151, 303, 453, 730
Sau3AI	GATC	4 cut(s)	82, 693, 975, 1140
SchI	GAGTC	3 cut(s)	209, 338, 1273
SduI	GDGCHC	3 cut(s)	592, 870, 1097
SfaNI	GCATC	3 cut(s)	513, 1106, 1135
SfcI	CTRYAG	4 cut(s)	549, 730, 748, 1122
Sfr303I	CCGCGG	1 cut(s)	402
SgrBI	CCGCGG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	5 cut(s)	109, 326, 478, 689, 837
SmoI	CTYRAG	5 cut(s)	109, 326, 478, 689, 837
Sse9I	AATT	7 cut(s)	261, 410, 850, 943, 971, 996, 1044
SsiI	CCGC	4 cut(s)	138, 399, 401, 993
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	237
StyI	CCWWGG	4 cut(s)	584, 593, 1089, 1098
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	1114, 1143
TasI	AATT	7 cut(s)	261, 410, 850, 943, 971, 996, 1044
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	528, 888, 1182
Tru1I	TTAA	6 cut(s)	110, 203, 470, 636, 905, 1043
Tru9I	TTAA	6 cut(s)	110, 203, 470, 636, 905, 1043
TscAI	CASTG	4 cut(s)	339, 392, 739, 1162
TseFI	GTSAC	4 cut(s)	330, 347, 1193, 1239
TseI	GCWGC	4 cut(s)	150, 302, 452, 729
Tsp45I	GTSAC	4 cut(s)	330, 347, 1193, 1239
TspRI	CASTG	4 cut(s)	339, 392, 739, 1162
Van91I	CCANNNNNTGG	1 cut(s)	186
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	787
XmnI	GAANNNNTTC	2 cut(s)	225, 1186
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.