Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Reverse (-)

51939891 .. 51940824

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGGAATGATCTCATTTCACGTATATTCATGAGCTGTGTCATGGATGTCATTCGCTGCGAAGTCAGGCCATTTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATGTTACTTGCCTGAATACTGAATCTAAAGAGACTAGTTCTACCGGTACGGATAGAGAGTTAAAAGTGGCTGGATTTGAAGCTGCTTTGAAGAACTGGCCACAACTTGAGTCACTGACCATTCCATGTGACTTTCCTGTGGAAATCATGGAGGTGATTGGTAAGCACTGTAATAAATTCGAGGAGATGAAATTGATGTGTGATTTTTATGAAGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGCGCTGAAGTGTCCAGGGGAGCTGTGCTTCACATACTGAATGAAATGAATCATTTGCAAGTGCTCAATTTATCTCACCCCTACATTGTGGATCACGCTCCAACACCAAACCGCCGCATAGTAGTACTCCGTGAACTTGATCAGCTGGTCATTGAAGCAGCATCATGGCTGAAGAAATTTCTTTTCTGTCGTAGCAGACTCTACTGCAACACTTGCAGGCTTCAGTTAAGTATGAATGGAGTGCTGATGCGGTGCAGATATGAAGAACGAGTTTGGAGAATGGATGAGGTGAGCTCACTTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

230

Amino Acids

26.41

Weight (kDa)

6.32

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	496, 499, 634
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	3 cut(s)	84, 290, 560
AcuI	CTGAAG	3 cut(s)	411, 575, 590
AfaI	GTAC	3 cut(s)	163, 332, 510
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	4 cut(s)	91, 194, 205, 539
AhlI	ACTAGT	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	5 cut(s)	36, 197, 407, 529, 678
AluI	AGCT	5 cut(s)	36, 197, 407, 529, 678
Alw21I	GWGCWC	2 cut(s)	450, 680
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	483
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	68, 212
ApeKI	GCWGC	4 cut(s)	57, 197, 347, 542
ApoI	RAATTY	3 cut(s)	84, 290, 560
AsiGI	ACCGGT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	280, 452, 685
AxyI	CCTNAGG	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	450, 680
BbvI	GCAGC	4 cut(s)	44, 184, 334, 554
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	140
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	5 cut(s)	58, 198, 348, 499, 543
BlsI	GCNGC	5 cut(s)	59, 199, 349, 500, 544
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	554, 621
BplI	GAGNNNNNCTC	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	242, 394
BsaAI	YACGTR	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	215
Bse21I	CCTNAGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	52, 673
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	44, 184, 334, 554
BsgI	GTGCAG	1 cut(s)	658
BshFI	GGCC	2 cut(s)	70, 214
BshTI	ACCGGT	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	450, 680
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	70, 214
Bsp1286I	GDGCHC	2 cut(s)	450, 680
Bsp143I	GATC	3 cut(s)	10, 475, 523
BspACI	CCGC	3 cut(s)	496, 499, 634
BspANI	GGCC	2 cut(s)	70, 214
BspHI	TCATGA	1 cut(s)	30
BspPI	GGATC	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	3 cut(s)	10, 475, 523
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	2 cut(s)	347, 597
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	52, 673
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	3 cut(s)	13, 478, 526
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	10, 475, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 384, 597
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	4 cut(s)	44, 184, 334, 554
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	70, 214
BtsCI	GGATG	2 cut(s)	52, 673
BtsIMutI	CAGTG	2 cut(s)	227, 280
Cac8I	GCNNGC	1 cut(s)	602
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	162, 331, 509
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	5 cut(s)	31, 43, 240, 262, 549
CviQI	GTAC	3 cut(s)	162, 331, 509
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	12, 477, 525
DpnII	GATC	3 cut(s)	10, 475, 523
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	680
Eco53kI	GAGCTC	1 cut(s)	678
Eco57I	CTGAAG	3 cut(s)	411, 575, 590
Eco81I	CCTNAGG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	680
FaeI	CATG	5 cut(s)	34, 46, 243, 265, 552
FatI	CATG	5 cut(s)	30, 42, 239, 261, 548
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	5 cut(s)	58, 198, 348, 499, 543
FokI	GGATG	2 cut(s)	59, 680
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	5 cut(s)	58, 198, 348, 499, 543
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	5 cut(s)	58, 198, 348, 499, 543
HaeIII	GGCC	2 cut(s)	70, 214
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	5 cut(s)	34, 46, 243, 265, 552
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	4 cut(s)	137, 224, 433, 582
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	3 cut(s)	280, 452, 685
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188III	TCNNGA	2 cut(s)	31, 373
Hpy8I	GTNNAC	1 cut(s)	518
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	4 cut(s)	442, 591, 600, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 384, 597
HpyF3I	CTNAG	1 cut(s)	380
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	34, 46, 243, 265, 552
HspAI	GCGC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	10, 475, 523
LmnI	GCTCC	2 cut(s)	404, 487
Lsp1109I	GCAGC	4 cut(s)	44, 184, 334, 554
LweI	GCATC	2 cut(s)	554, 621
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	3 cut(s)	118, 225, 242
MalI	GATC	3 cut(s)	12, 477, 525
MboI	GATC	3 cut(s)	10, 475, 523
MboII	GAAGA	4 cut(s)	217, 338, 568, 659
MhlI	GDGCHC	2 cut(s)	450, 680
MlsI	TGGCCA	1 cut(s)	214
MluCI	AATT	5 cut(s)	84, 290, 305, 451, 560
MluNI	TGGCCA	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	233, 576
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	4 cut(s)	259, 289, 331, 664
Mox20I	TGGCCA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	3 cut(s)	176, 365, 611
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	347, 384, 597
NdeII	GATC	3 cut(s)	10, 475, 523
NlaIII	CATG	5 cut(s)	34, 46, 243, 265, 552
NmuCI	GTSAC	2 cut(s)	225, 242
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	137, 433
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	59, 199, 349, 500, 544
PleI	GAGTC	2 cut(s)	232, 576
PpsI	GAGTC	2 cut(s)	232, 576
Ppu21I	YACGTR	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	3 cut(s)	163, 332, 510
RsaNI	GTAC	3 cut(s)	162, 331, 509
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	176, 365, 611
SatI	GCNGC	5 cut(s)	58, 198, 348, 499, 543
Sau3AI	GATC	3 cut(s)	10, 475, 523
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	2 cut(s)	233, 576
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	450, 680
SfaNI	GCATC	2 cut(s)	554, 621
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	221, 373
SmoI	CTYRAG	2 cut(s)	221, 373
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	5 cut(s)	84, 290, 305, 451, 560
SsiI	CCGC	3 cut(s)	496, 499, 634
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	294
TasI	AATT	5 cut(s)	84, 290, 305, 451, 560
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	2 cut(s)	137, 433
Tru1I	TTAA	3 cut(s)	176, 365, 611
Tru9I	TTAA	3 cut(s)	176, 365, 611
TscAI	CASTG	2 cut(s)	234, 287
TseFI	GTSAC	2 cut(s)	225, 242
TseI	GCWGC	4 cut(s)	57, 197, 347, 542
Tsp45I	GTSAC	2 cut(s)	225, 242
TspDTI	ATGAA	7 cut(s)	19, 317, 339, 441, 446, 632, 660
TspGWI	ACGGA	2 cut(s)	179, 503
TspRI	CASTG	2 cut(s)	234, 287
XapI	RAATTY	3 cut(s)	84, 290, 560
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.