Rh7BG175500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004535
Physical Location & Seq
Forward (+)
13752605 .. 13753346
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG175500.1

Sequence Viewer

Length: 645 bp
ATGACGACAAACAAAAACTCAAGATTTGACAGATGGGCAGACCTGGATAAAGATGTACTTGTAGGTATATTCATGACACTGAATGTTGTGGAATTAATCCGTGGGGCATCTGTTTGCAAATCTTGGCTGGAAGCAGCTTCGGAACCCTGCCTTTGGAAGACAGTTGACTTAAGTAAGCTAGAGGTCAAGAACTTTAACCGACAGCGTGAGCAGTCTAGCCAGAGGGTTATGGATATTGTGAATAGTGCTTTCAGTTTAAGTGGTGGAACTATATCTTTCTTTATTTTCCACTTCTATGCATACAGCACTTGCACCCCGAATCTCAAAAGACTTGTTCTACCAGTTCGGGACAACGATATACTAGTTAATGAGTTTGAAGAAGCTGCAAATAACTGGCCACTTCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTCATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGCGAGCTGAAAATGATGCACCGGTTTAACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGGTCATAAGTCTTCGGTGCAATAGAGTGCATAGGGATGCTATACTTTTCTTGCTCAAGGAATTGAGGCAGTTAGAAGTGTTGAATATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

214

Amino Acids

24.54

Weight (kDa)

8.21

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 1.8e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 395
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 169
AgeI ACCGGT 1 cut(s) 498
AgsI TTSAA 4 cut(s) 377, 440, 550, 634
AhlI ACTAGT 1 cut(s) 361
AjnI CCWGG 2 cut(s) 42, 421
AluBI AGCT 5 cut(s) 137, 178, 383, 429, 484
AluI AGCT 5 cut(s) 137, 178, 383, 429, 484
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 134, 383
AseI ATTAAT 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 498
BalI TGGCCA 1 cut(s) 397
BbsI GAAGAC 2 cut(s) 164, 554
BbvCI CCTCAGC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 146, 370
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 44, 423
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 3 cut(s) 179, 216, 362
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 135, 384
BlsI GCNGC 2 cut(s) 136, 385
Bme1390I CCNGG 2 cut(s) 44, 423
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 44, 423
BmsI GCATC 3 cut(s) 116, 483, 577
BpiI GAAGAC 2 cut(s) 164, 554
Bpu10I CCTNAGC 1 cut(s) 476
BpuEI CTTGAG 3 cut(s) 4, 425, 590
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 498
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 498
Bse1I ACTGG 2 cut(s) 341, 398
BseBI CCWGG 2 cut(s) 44, 423
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 490
BseNI ACTGG 2 cut(s) 341, 398
BseXI GCAGC 2 cut(s) 146, 370
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 498
BsiSI CCGG 1 cut(s) 499
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 1 cut(s) 397
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 489
BspHI TCATGA 2 cut(s) 72, 444
BspLI GGNNCC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 498
BsrI ACTGG 2 cut(s) 341, 398
BssAI RCCGGY 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 100
Bst2UI CCWGG 2 cut(s) 44, 423
Bst4CI ACNGT 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 476
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 592
BstNI CCWGG 2 cut(s) 44, 423
BstSCI CCNGG 2 cut(s) 42, 421
BstV1I GCAGC 2 cut(s) 146, 370
BstV2I GAAGAC 2 cut(s) 164, 554
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 77, 463
Cac8I GCNNGC 1 cut(s) 482
CciI TCATGA 2 cut(s) 72, 444
Cfr10I RCCGGY 1 cut(s) 498
Csp6I GTAC 1 cut(s) 56
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 3 cut(s) 73, 445, 508
CviJI RGCY 8 cut(s) 127, 137, 178, 219, 383, 397, 429, 484
CviKI_1 RGCY 8 cut(s) 127, 137, 178, 219, 383, 397, 429, 484
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 42, 421
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 3 cut(s) 76, 448, 511
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 362
FatI CATG 3 cut(s) 72, 444, 507
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 135, 384
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 2 cut(s) 135, 384
FspBI CTAG 3 cut(s) 179, 216, 362
GluI GCNGC 2 cut(s) 135, 384
HaeIII GGCC 1 cut(s) 397
HapII CCGG 1 cut(s) 499
Hin1II CATG 3 cut(s) 76, 448, 511
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 2 cut(s) 319, 407
HpaII CCGG 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 6 cut(s) 21, 73, 187, 347, 404, 445
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 442, 544
HpyCH4III ACNGT 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 3 cut(s) 76, 448, 511
Lsp1109I GCAGC 2 cut(s) 146, 370
LweI GCATC 3 cut(s) 116, 483, 577
MaeI CTAG 3 cut(s) 179, 216, 362
MboII GAAGA 3 cut(s) 169, 389, 554
MfeI CAATTG 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 397
MluCI AATT 4 cut(s) 92, 453, 511, 611
MluNI TGGCCA 1 cut(s) 397
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 4 cut(s) 175, 216, 485, 609
Mox20I TGGCCA 1 cut(s) 397
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 1 cut(s) 397
MseI TTAA 6 cut(s) 95, 170, 195, 257, 366, 504
MslI CAYNNNNRTG 2 cut(s) 294, 585
Msp20I TGGCCA 1 cut(s) 397
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 2 cut(s) 44, 423
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 44, 423
NdeI CATATG 1 cut(s) 535
NlaIII CATG 3 cut(s) 76, 448, 511
NlaIV GGNNCC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 2 cut(s) 72, 444
PfeI GAWTC 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 498
PkrI GCNGC 2 cut(s) 136, 385
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 42, 421
PspGI CCWGG 2 cut(s) 42, 421
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 2 cut(s) 294, 585
SaqAI TTAA 6 cut(s) 95, 170, 195, 257, 366, 504
SatI GCNGC 2 cut(s) 135, 384
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 44, 423
SfaNI GCATC 3 cut(s) 116, 483, 577
SmiMI CAYNNNNRTG 2 cut(s) 294, 585
SmlI CTYRAG 4 cut(s) 19, 169, 404, 605
SmoI CTYRAG 4 cut(s) 19, 169, 404, 605
SpeI ACTAGT 1 cut(s) 361
Sse9I AATT 4 cut(s) 92, 453, 511, 611
SspMI CTAG 3 cut(s) 179, 216, 362
StyD4I CCNGG 2 cut(s) 42, 421
TaaI ACNGT 1 cut(s) 163
TasI AATT 4 cut(s) 92, 453, 511, 611
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 6 cut(s) 95, 170, 195, 257, 366, 504
Tru9I TTAA 6 cut(s) 95, 170, 195, 257, 366, 504
TscAI CASTG 2 cut(s) 84, 470
TseI GCWGC 2 cut(s) 134, 383
TspDTI ATGAA 3 cut(s) 61, 461, 524
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 84, 470
Vha464I CTTAAG 1 cut(s) 169
VspI ATTAAT 1 cut(s) 95
XspI CTAG 3 cut(s) 179, 216, 362
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.