Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004229.1

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Reverse (-)

11038 .. 11669

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004229.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgacactgaatgttgtggaattaatccgtggggtatctgtttgcaaatcttggcttgaagcagcttcggaaccctgcctttggaagacaattgacttaagtaagctggaggtcaagaactttaaccaacagcgtgagcacaccccgaatctcaaaagactagttaatgagtttgaagaagctgcgaagaactggccacttcttgagtcattgactattcctggtagcttttctattgaactcatgaaggcaattggtcagcactgcaagaacctcagagagctgaaaatgatgcaccggtttgacatgaattgtgcagagaacattcttgcatatgcaccaagtttgaaggtcataagtcttcggtgcaatagagtgcacatggatgctgcacttttcttgctcggggaattgaggcagttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

141

Amino Acids

16.22

Weight (kDa)

8.31

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	97
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	59, 176, 239, 349
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	65, 106, 182, 228, 283
AluI	AGCT	5 cut(s)	65, 106, 182, 228, 283
Alw21I	GWGCWC	2 cut(s)	141, 381
Alw44I	GTGCAC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	62, 182, 389
AseI	ATTAAT	1 cut(s)	23
AsiGI	ACCGGT	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	92, 353
Bbv12I	GWGCWC	2 cut(s)	141, 381
BbvI	GCAGC	3 cut(s)	74, 169, 376
BciT130I	CCWGG	1 cut(s)	222
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	97
BisI	GCNGC	3 cut(s)	63, 183, 390
BlsI	GCNGC	3 cut(s)	64, 184, 391
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	282, 376
BpiI	GAAGAC	2 cut(s)	92, 353
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	3 cut(s)	74, 169, 376
BsgI	GTGCAG	2 cut(s)	336, 375
BshFI	GGCC	1 cut(s)	196
BshTI	ACCGGT	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	141, 381
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	81
BsnI	GGCC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	141, 381
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	72
BspTI	CTTAAG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	74, 169, 376
BstV2I	GAAGAC	2 cut(s)	92, 353
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	5, 262
CciI	TCATGA	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	297
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	3 cut(s)	244, 307, 382
CviJI	RGCY	7 cut(s)	55, 65, 106, 182, 196, 228, 283
CviKI_1	RGCY	7 cut(s)	55, 65, 106, 182, 196, 228, 283
DdeI	CTNAG	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	247, 310, 385
FaiI	YATR	7 cut(s)	245, 308, 334, 336, 356, 383, 424
FatI	CATG	3 cut(s)	243, 306, 381
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	63, 183, 390
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	63, 183, 390
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	63, 183, 390
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	3 cut(s)	247, 310, 385
HinfI	GANTC	2 cut(s)	148, 206
HpaII	CCGG	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	70, 278
Hpy188III	TCNNGA	3 cut(s)	115, 203, 244
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	241, 343
HpyCH4V	TGCA	9 cut(s)	45, 267, 295, 317, 332, 338, 369, 379, 392
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	247, 310, 385
LpnPI	CCDG	6 cut(s)	88, 92, 178, 207, 234, 311
Lsp1109I	GCAGC	3 cut(s)	74, 169, 376
LweI	GCATC	2 cut(s)	282, 376
MaeI	CTAG	1 cut(s)	161
MboII	GAAGA	4 cut(s)	97, 188, 199, 353
MfeI	CAATTG	2 cut(s)	90, 252
MhlI	GDGCHC	2 cut(s)	141, 381
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	5 cut(s)	20, 90, 252, 310, 410
MluNI	TGGCCA	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	103, 284, 408
Mox20I	TGGCCA	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	4 cut(s)	23, 98, 123, 165
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	196
MspCI	CTTAAG	1 cut(s)	97
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	2 cut(s)	90, 252
MvaI	CCWGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	334
NlaIII	CATG	3 cut(s)	247, 310, 385
NlaIV	GGNNCC	1 cut(s)	72
PagI	TCATGA	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	148
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	64, 184, 391
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	23, 98, 123, 165
SatI	GCNGC	3 cut(s)	63, 183, 390
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	141, 381
SetI	ASST	8 cut(s)	67, 108, 114, 184, 230, 276, 285, 354
SfaNI	GCATC	2 cut(s)	282, 376
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	97, 203
SmoI	CTYRAG	2 cut(s)	97, 203
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	5 cut(s)	20, 90, 252, 310, 410
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	220
TasI	AATT	5 cut(s)	20, 90, 252, 310, 410
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	4 cut(s)	23, 98, 123, 165
Tru9I	TTAA	4 cut(s)	23, 98, 123, 165
TscAI	CASTG	2 cut(s)	12, 269
TseI	GCWGC	3 cut(s)	62, 182, 389
TspDTI	ATGAA	2 cut(s)	260, 323
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	12, 269
Vha464I	CTTAAG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	23
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.