Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

13756789 .. 13757292

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG175600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGATGAACAACAAGTACAACTTCAGAAATCAGGGAGAGATGGGGAATGATCTCATTTCACGTATATTCATGAGCTTAAGTGTCATGGATGTCATTCACTGCGGAAGTGTTTGCTGCTCTTGGAGGGAAGTTTCTTCCAATACCAGACTTTGGAAGACTATAGACTTAACTAAGGTGGACTCAGAAATATTTCTTCAATCTAGGTCAGGCCATATTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATGTTACTTGCCTGGTTTTTAACTACTACTTTTACATGAGGAATAGTTATTTGATCCATGTTTCTCAAAGAATACTGAATCTAAAAAGACTAGTTCTACCGGTACGGTATAGAGAGTTAAAAGTGGCTGGATTTGAAGCTGCTTTGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

137

Amino Acids

15.93

Weight (kDa)

9.69

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 53	2.3e-06	F-box domain
F-box-like	PF12937	18 - 57	5.3e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	10
AfaI	GTAC	2 cut(s)	20, 363
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	79
AgeI	ACCGGT	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	200, 235, 395, 406
AhlI	ACTAGT	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	2 cut(s)	78, 398
AluI	AGCT	2 cut(s)	78, 398
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	117, 398
ApoI	RAATTY	1 cut(s)	228
AsiGI	ACCGGT	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	104, 385
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	2 cut(s)	204, 350
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	2 cut(s)	118, 399
BlsI	GCNGC	2 cut(s)	119, 400
Bme1390I	CCNGG	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	104, 385
BshFI	GGCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	52, 312
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	72
BspPI	GGATC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssMI	GATC	2 cut(s)	52, 312
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	174, 184
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	55, 315
BstMBI	GATC	2 cut(s)	52, 312
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	104, 385
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	19, 362
CspAI	ACCGGT	1 cut(s)	358
CviAII	CATG	4 cut(s)	73, 88, 295, 317
CviJI	RGCY	4 cut(s)	78, 213, 386, 398
CviKI_1	RGCY	4 cut(s)	78, 213, 386, 398
CviQI	GTAC	2 cut(s)	19, 362
DdeI	CTNAG	2 cut(s)	174, 184
DpnI	GATC	2 cut(s)	54, 314
DpnII	GATC	2 cut(s)	52, 312
Eco57I	CTGAAG	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	76, 91, 298, 320
FaiI	YATR	9 cut(s)	68, 74, 89, 164, 216, 224, 296, 318, 369
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	4 cut(s)	72, 87, 294, 316
Fnu4HI	GCNGC	2 cut(s)	118, 399
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	118, 399
FspBI	CTAG	2 cut(s)	204, 350
GluI	GCNGC	2 cut(s)	118, 399
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	4 cut(s)	76, 91, 298, 320
HinfI	GANTC	2 cut(s)	182, 337
HpaII	CCGG	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	29, 187
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	174, 184
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	76, 91, 298, 320
Kzo9I	GATC	2 cut(s)	52, 312
LpnPI	CCDG	7 cut(s)	20, 160, 195, 257, 284, 372, 372
Lsp1109I	GCAGC	2 cut(s)	104, 385
MaeI	CTAG	2 cut(s)	204, 350
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	54, 314
MboI	GATC	2 cut(s)	52, 312
MboII	GAAGA	4 cut(s)	16, 129, 169, 188
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	120, 291
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	4 cut(s)	80, 170, 279, 377
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	52, 312
NlaIII	CATG	4 cut(s)	76, 91, 298, 320
PagI	TCATGA	1 cut(s)	72
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	119, 400
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PsrI	GAACNNNNNNTAC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	20, 363
RsaNI	GTAC	2 cut(s)	19, 362
SaqAI	TTAA	4 cut(s)	80, 170, 279, 377
SatI	GCNGC	2 cut(s)	118, 399
Sau3AI	GATC	2 cut(s)	52, 312
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	5 cut(s)	67, 80, 180, 209, 400
SfcI	CTRYAG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	105
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	204, 350
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	80, 170, 279, 377
Tru9I	TTAA	4 cut(s)	80, 170, 279, 377
TscAI	CASTG	1 cut(s)	107
TseI	GCWGC	2 cut(s)	117, 398
TspDTI	ATGAA	3 cut(s)	17, 23, 61
TspRI	CASTG	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	204, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.