Rh7DG174600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004535
Physical Location & Seq
Forward (+)
16007724 .. 16009546
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG174600.1

Sequence Viewer

Length: 636 bp
ATGACTATATATCTTGCTTTGATCCTTGATGGTTTCAGCCACATGTTTTCTACGATGACGACAAACAAAAATTCAAGATTTGACATATGGGCAGACCTGGATAAAGATGTACTTGTAGGTATATTCATGACACTGAATGTTGTGGAATTAATCCGTGGGGCATCTGTTTGCAAATCTTGGCTTGAAGCAGCTTCGGAACCCTGCCTTTGGAAGACAATTGACTTAAGTAAGCTGGAGGTCAAGAACTTTAACCAACAGCGTGAGCAGTCTAGCCAGAGGTTCAAACTTCCCAAAAATGTTCTAAAGAGGTTACTTGGTGAAATCACCCCGAATCTCAAAAGACTAGTTAATGAGTTTGAAGAAGCTGCGAAGAACTGGCCACTTCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTCATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGAGAGCTGAAAATGATGCACCGGTTTGACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGATTAATTCAAATGGGCTGTTGTTCTGGACTCAAAACAACGAAGCCATTTGGATAATGGACGAGATTTCGATTTATGAAGTGAAGTTTAAATATTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

211

Amino Acids

24.49

Weight (kDa)

7.64

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 35 - 75 1.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 207
AflII CTTAAG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 42
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 7 cut(s) 75, 185, 283, 359, 422, 532, 543
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 2 cut(s) 96, 403
AluBI AGCT 5 cut(s) 191, 232, 365, 411, 466
AluI AGCT 5 cut(s) 191, 232, 365, 411, 466
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 188, 365
ApoI RAATTY 1 cut(s) 70
AseI ATTAAT 2 cut(s) 149, 537
AsiGI ACCGGT 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 316, 329
BalI TGGCCA 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 200, 352
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 98, 405
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 2 cut(s) 270, 344
BfrI CTTAAG 1 cut(s) 223
BisI GCNGC 2 cut(s) 189, 366
BlsI GCNGC 2 cut(s) 190, 367
Bme1390I CCNGG 2 cut(s) 98, 405
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 98, 405
BmsI GCATC 2 cut(s) 170, 465
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 480
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 2 cut(s) 98, 405
BseDI CCNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 472
BseNI ACTGG 1 cut(s) 380
BseXI GCAGC 2 cut(s) 200, 352
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 1 cut(s) 379
BshTI ACCGGT 1 cut(s) 480
BsiSI CCGG 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 207
BsnI GGCC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 21
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 471
BspHI TCATGA 2 cut(s) 126, 426
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 480
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 98, 405
BstAFI CTTAAG 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 154
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstNI CCWGG 2 cut(s) 98, 405
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 96, 403
BstV1I GCAGC 2 cut(s) 200, 352
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 131, 445
CciI TCATGA 2 cut(s) 126, 426
Cfr10I RCCGGY 1 cut(s) 480
Csp6I GTAC 1 cut(s) 110
CspAI ACCGGT 1 cut(s) 480
CviAII CATG 4 cut(s) 43, 127, 427, 490
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 458
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 96, 403
FaeI CATG 4 cut(s) 46, 130, 430, 493
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 4 cut(s) 42, 126, 426, 489
FauNDI CATATG 2 cut(s) 86, 517
Fnu4HI GCNGC 2 cut(s) 189, 366
Fsp4HI GCNGC 2 cut(s) 189, 366
FspBI CTAG 2 cut(s) 270, 344
GluI GCNGC 2 cut(s) 189, 366
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 379
HapII CCGG 1 cut(s) 481
Hin1II CATG 4 cut(s) 46, 130, 430, 493
HinfI GANTC 3 cut(s) 331, 389, 562
HpaII CCGG 1 cut(s) 481
HphI GGTGA 2 cut(s) 316, 329
Hpy188I TCNGA 2 cut(s) 196, 461
Hpy188III TCNNGA 6 cut(s) 75, 127, 241, 386, 427, 559
HpyAV CCTTC 1 cut(s) 424
HpyCH4V TGCA 6 cut(s) 171, 450, 478, 500, 515, 521
HpyF3I CTNAG 1 cut(s) 458
Hsp92II CATG 4 cut(s) 46, 130, 430, 493
Kzo9I GATC 1 cut(s) 21
Lsp1109I GCAGC 2 cut(s) 200, 352
LweI GCATC 2 cut(s) 170, 465
MaeI CTAG 2 cut(s) 270, 344
MaeIII GTNAC 1 cut(s) 309
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 4 cut(s) 223, 371, 382, 544
MfeI CAATTG 2 cut(s) 216, 435
MlsI TGGCCA 1 cut(s) 379
MluCI AATT 6 cut(s) 70, 146, 216, 435, 493, 538
MluNI TGGCCA 1 cut(s) 379
MlyI GAGTC 2 cut(s) 398, 556
MnlI CCTC 4 cut(s) 229, 270, 300, 467
Mox20I TGGCCA 1 cut(s) 379
MscI TGGCCA 1 cut(s) 379
MseI TTAA 7 cut(s) 149, 224, 249, 348, 537, 621, 634
Msp20I TGGCCA 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 223
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 2 cut(s) 98, 405
MunI CAATTG 2 cut(s) 216, 435
MvaI CCWGG 2 cut(s) 98, 405
NdeI CATATG 2 cut(s) 86, 517
NdeII GATC 1 cut(s) 21
NlaIII CATG 4 cut(s) 46, 130, 430, 493
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 46
PagI TCATGA 2 cut(s) 126, 426
PciI ACATGT 1 cut(s) 42
PfeI GAWTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 2 cut(s) 190, 367
PleI GAGTC 2 cut(s) 397, 556
PpsI GAGTC 2 cut(s) 397, 556
PscI ACATGT 1 cut(s) 42
PshBI ATTAAT 2 cut(s) 149, 537
Psp6I CCWGG 2 cut(s) 96, 403
PspGI CCWGG 2 cut(s) 96, 403
PspN4I GGNNCC 1 cut(s) 198
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 7 cut(s) 149, 224, 249, 348, 537, 621, 634
SatI GCNGC 2 cut(s) 189, 366
Sau3AI GATC 1 cut(s) 21
SchI GAGTC 2 cut(s) 398, 556
ScrFI CCNGG 2 cut(s) 98, 405
SfaNI GCATC 2 cut(s) 170, 465
SmlI CTYRAG 2 cut(s) 223, 386
SmoI CTYRAG 2 cut(s) 223, 386
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 6 cut(s) 70, 146, 216, 435, 493, 538
SspI AATATT 1 cut(s) 626
SspMI CTAG 2 cut(s) 270, 344
StyD4I CCNGG 2 cut(s) 96, 403
TaqI TCGA 1 cut(s) 602
TasI AATT 6 cut(s) 70, 146, 216, 435, 493, 538
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 7 cut(s) 149, 224, 249, 348, 537, 621, 634
Tru9I TTAA 7 cut(s) 149, 224, 249, 348, 537, 621, 634
TscAI CASTG 2 cut(s) 138, 452
TseI GCWGC 2 cut(s) 188, 365
TspDTI ATGAA 4 cut(s) 115, 443, 506, 624
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 138, 452
Vha464I CTTAAG 1 cut(s) 223
VspI ATTAAT 2 cut(s) 149, 537
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XspI CTAG 2 cut(s) 270, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.