Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

15026457 .. 15035653

Gene Structure 9197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTGAATTGGCATATTCCTGTTGGTTCTTTCTCAAGGATTTATAACGTGGTTGGTGTGCTGTTACAAGGGTTTTCCTGTAAATTCATTAGCCAAGTAATCCCCCCCCCCCCCCCCTGTATGAAGATCAGCTGGCTCATTTCTGTGTTATCTCAGACTTACAACTTCAGAAATCAGGGAGAGATGGGGAATGATCTCATTTCACGCATATTCATGAGCTTAAGTGTCATGGATGTCATTCGCTACGGAAGTGTTTGCTGCTCTTGGAGGGAAGTGGACTCAGAAATATTTCTTCAATCTAGGTCAGGCCATATTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATGTTACTTGCCTGGTTTTTAACTACTACTTTTACATGAGGAATAGTTATTTGATCCATATTTTAAAAGTGGCTGGATTTGAAGTTGCTTTGAAGAACTGGCCACAACTGGAGTCACTGACTGATAAAGTAATCCGGGGTTCACATCCAAAACCAATTGGCAATGGATGGAGTGGCCCAAACCCTTATAAACCCATAGGCAATGTCCCATTTTTCCCATGTGGGATGTATATATTCTCAACGCTGACCATTCCATGTGACTTTCTTGTGGAAATCATGGAGGTGATTGGTAAGCACTGTAATAAATTCGCGGAGATGAAATTGATGTGTGATTTTTATGAGGAGTACGCAGAGGACTTGAGCCTTAGGTGCACTGAAGTGTCCAGGGGAGCTGTGGTTCACATACTGAATCAAATGAATCATTTGCAAGTGCTCAATTTATCTCACTCCTACATTGTGGATCACGCTCCAACACCAAACCGCCACATAGTAGTACTCCGTGAACTTGATCAGGTGGTCATTGAAGCAGCATCATGGCTGAAGAAATTTCTTTTCTGTCGTAGCAGAGTCTACTGCAACACTTGCATGCTTCAGTTAAGTATGAATGGAGTGCTGATGCGGTGCAGATATGAAGAGAACGAGTTTGGAGAATGGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

338

Amino Acids

38.89

Weight (kDa)

8.16

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	45, 543
AccI	GTMKAC	1 cut(s)	924
AccII	CGCG	1 cut(s)	665
AciI	CCGC	3 cut(s)	665, 835, 973
AclWI	GGATC	2 cut(s)	403, 822
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	4 cut(s)	83, 324, 659, 899
AcuI	CTGAAG	4 cut(s)	151, 750, 914, 929
AfaI	GTAC	2 cut(s)	701, 849
AflII	CTTAAG	1 cut(s)	220
AgsI	TTSAA	6 cut(s)	7, 296, 331, 437, 448, 878
AjnI	CCWGG	2 cut(s)	366, 737
AleI	CACNNNNGTG	1 cut(s)	731
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	3 cut(s)	132, 219, 746
AluI	AGCT	3 cut(s)	132, 219, 746
Alw21I	GWGCWC	2 cut(s)	728, 789
Alw44I	GTGCAC	1 cut(s)	724
AlwI	GGATC	2 cut(s)	403, 822
AoxI	GGCC	3 cut(s)	307, 455, 529
ApaLI	GTGCAC	1 cut(s)	724
ApeKI	GCWGC	2 cut(s)	258, 881
ApoI	RAATTY	4 cut(s)	83, 324, 659, 899
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	649
AxyI	CCTNAGG	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	457
Bbv12I	GWGCWC	2 cut(s)	728, 789
BbvI	GCAGC	2 cut(s)	245, 893
BccI	CCATC	2 cut(s)	178, 516
BciT130I	CCWGG	2 cut(s)	368, 739
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	491
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	220
BisI	GCNGC	2 cut(s)	259, 882
BlsI	GCNGC	2 cut(s)	260, 883
BmcAI	AGTACT	1 cut(s)	849
Bme1390I	CCNGG	3 cut(s)	368, 491, 739
BmgT120I	GGNCC	1 cut(s)	530
BmrFI	CCNGG	3 cut(s)	368, 491, 739
BmsI	GCATC	2 cut(s)	893, 960
BpmI	CTGGAG	1 cut(s)	485
BpuEI	CTTGAG	2 cut(s)	19, 733
BpuMI	CCSGG	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	490, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bse1I	ACTGG	2 cut(s)	458, 468
Bse21I	CCTNAGG	1 cut(s)	719
Bse3DI	GCAATG	2 cut(s)	523, 562
BseBI	CCWGG	2 cut(s)	368, 739
BseDI	CCNNGG	2 cut(s)	490, 738
BseGI	GGATG	5 cut(s)	238, 499, 527, 585, 1014
BseMI	GCAATG	2 cut(s)	523, 562
BseMII	CTCAG	2 cut(s)	167, 294
BseNI	ACTGG	2 cut(s)	458, 468
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	2 cut(s)	245, 893
BsgI	GTGCAG	1 cut(s)	997
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	3 cut(s)	309, 457, 531
BsiHKAI	GWGCWC	2 cut(s)	728, 789
BsiSI	CCGG	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	309, 457, 531
Bsp1286I	GDGCHC	2 cut(s)	728, 789
Bsp143I	GATC	5 cut(s)	126, 193, 408, 814, 862
BspACI	CCGC	3 cut(s)	665, 835, 973
BspANI	GGCC	3 cut(s)	309, 457, 531
BspCNI	CTCAG	2 cut(s)	166, 293
BspFNI	CGCG	1 cut(s)	665
BspHI	TCATGA	1 cut(s)	213
BspPI	GGATC	2 cut(s)	403, 822
BspTI	CTTAAG	1 cut(s)	220
BsrDI	GCAATG	2 cut(s)	523, 562
BsrI	ACTGG	2 cut(s)	458, 468
BssECI	CCNNGG	2 cut(s)	490, 738
BssMI	GATC	5 cut(s)	126, 193, 408, 814, 862
Bst2UI	CCWGG	2 cut(s)	368, 739
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	981
BstAFI	CTTAAG	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	936
BstC8I	GCNNGC	2 cut(s)	134, 941
BstDEI	CTNAG	3 cut(s)	153, 280, 719
BstF5I	GGATG	5 cut(s)	238, 499, 527, 585, 1014
BstFNI	CGCG	1 cut(s)	665
BstKTI	GATC	5 cut(s)	129, 196, 411, 817, 865
BstMBI	GATC	5 cut(s)	126, 193, 408, 814, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	723, 936
BstNI	CCWGG	2 cut(s)	368, 739
BstNSI	RCATGY	1 cut(s)	943
BstSCI	CCNGG	3 cut(s)	366, 489, 737
BstSLI	GKGCMC	1 cut(s)	728
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	245, 893
Bsu36I	CCTNAGG	1 cut(s)	719
BsuRI	GGCC	3 cut(s)	309, 457, 531
BtsCI	GGATG	5 cut(s)	238, 499, 527, 585, 1014
BtsIMutI	CAGTG	3 cut(s)	470, 649, 726
Cac8I	GCNNGC	2 cut(s)	134, 941
CciI	TCATGA	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	700, 848
CviAII	CATG	8 cut(s)	214, 229, 391, 573, 609, 631, 888, 940
CviQI	GTAC	2 cut(s)	700, 848
DdeI	CTNAG	3 cut(s)	153, 280, 719
DpnI	GATC	5 cut(s)	128, 195, 410, 816, 864
DpnII	GATC	5 cut(s)	126, 193, 408, 814, 862
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	981
EarI	CTCTTC	1 cut(s)	981
Eco57I	CTGAAG	4 cut(s)	151, 750, 914, 929
Eco81I	CCTNAGG	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	366, 737
FaeI	CATG	8 cut(s)	217, 232, 394, 576, 612, 634, 891, 943
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	8 cut(s)	213, 228, 390, 572, 608, 630, 887, 939
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	2 cut(s)	259, 882
FokI	GGATG	4 cut(s)	245, 486, 534, 592
Fsp4HI	GCNGC	2 cut(s)	259, 882
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	259, 882
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	309, 457, 531
HapII	CCGG	1 cut(s)	490
Hin1II	CATG	8 cut(s)	217, 232, 394, 576, 612, 634, 891, 943
HinfI	GANTC	5 cut(s)	278, 467, 763, 772, 921
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	6 cut(s)	277, 497, 726, 754, 857, 925
Hpy188I	TCNGA	3 cut(s)	156, 170, 283
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	6 cut(s)	277, 497, 726, 754, 857, 925
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	726, 781, 930, 939, 978
HpyF10VI	GCNNNNNNNGC	2 cut(s)	723, 936
HpyF3I	CTNAG	3 cut(s)	153, 280, 719
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	8 cut(s)	217, 232, 394, 576, 612, 634, 891, 943
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	5 cut(s)	126, 193, 408, 814, 862
LmnI	GCTCC	2 cut(s)	743, 826
Lsp1109I	GCAGC	2 cut(s)	245, 893
LweI	GCATC	2 cut(s)	893, 960
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	4 cut(s)	63, 358, 468, 611
MalI	GATC	5 cut(s)	128, 195, 410, 816, 864
MboI	GATC	5 cut(s)	126, 193, 408, 814, 862
MboII	GAAGA	5 cut(s)	136, 284, 460, 907, 998
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	728, 789
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	8 cut(s)	7, 83, 324, 510, 659, 674, 790, 899
MluNI	TGGCCA	1 cut(s)	457
MlyI	GAGTC	3 cut(s)	272, 476, 930
MmeI	TCCRAC	1 cut(s)	848
MnlI	CCTC	6 cut(s)	261, 387, 628, 688, 700, 1005
Mox20I	TGGCCA	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	4 cut(s)	221, 375, 419, 950
MslI	CAYNNNNRTG	5 cut(s)	143, 212, 635, 731, 938
Msp20I	TGGCCA	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	3 cut(s)	368, 491, 739
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	368, 739
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	2 cut(s)	723, 936
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	126, 193, 408, 814, 862
NlaIII	CATG	8 cut(s)	217, 232, 394, 576, 612, 634, 891, 943
NmuCI	GTSAC	2 cut(s)	468, 611
NspI	RCATGY	1 cut(s)	943
OliI	CACNNNNGTG	1 cut(s)	731
PaeI	GCATGC	1 cut(s)	943
PagI	TCATGA	1 cut(s)	213
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	763, 772
PkrI	GCNGC	2 cut(s)	260, 883
PleI	GAGTC	3 cut(s)	272, 475, 929
PpsI	GAGTC	3 cut(s)	272, 475, 929
PsiI	TTATAA	2 cut(s)	45, 543
Psp6I	CCWGG	2 cut(s)	366, 737
PspGI	CCWGG	2 cut(s)	366, 737
PspPI	GGNCC	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	2 cut(s)	701, 849
RsaNI	GTAC	2 cut(s)	700, 848
RseI	CAYNNNNRTG	5 cut(s)	143, 212, 635, 731, 938
SaqAI	TTAA	4 cut(s)	221, 375, 419, 950
SatI	GCNGC	2 cut(s)	259, 882
Sau3AI	GATC	5 cut(s)	126, 193, 408, 814, 862
Sau96I	GGNCC	1 cut(s)	530
ScaI	AGTACT	1 cut(s)	849
SchI	GAGTC	3 cut(s)	272, 476, 930
ScrFI	CCNGG	3 cut(s)	368, 491, 739
SduI	GDGCHC	2 cut(s)	728, 789
SetI	ASST	9 cut(s)	51, 134, 221, 305, 639, 725, 748, 870, 1016
SfaNI	GCATC	2 cut(s)	893, 960
SmiMI	CAYNNNNRTG	5 cut(s)	143, 212, 635, 731, 938
SmlI	CTYRAG	3 cut(s)	34, 220, 712
SmoI	CTYRAG	3 cut(s)	34, 220, 712
SphI	GCATGC	1 cut(s)	943
Sse9I	AATT	8 cut(s)	7, 83, 324, 510, 659, 674, 790, 899
SsiI	CCGC	3 cut(s)	665, 835, 973
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	366, 489, 737
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	51
TasI	AATT	8 cut(s)	7, 83, 324, 510, 659, 674, 790, 899
TatI	WGTACW	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	763, 772
Tru1I	TTAA	4 cut(s)	221, 375, 419, 950
Tru9I	TTAA	4 cut(s)	221, 375, 419, 950
TscAI	CASTG	3 cut(s)	477, 656, 733
TseFI	GTSAC	2 cut(s)	468, 611
TseI	GCWGC	2 cut(s)	258, 881
Tsp45I	GTSAC	2 cut(s)	468, 611
TspDTI	ATGAA	7 cut(s)	76, 137, 202, 686, 785, 971, 999
TspGWI	ACGGA	2 cut(s)	261, 842
TspRI	CASTG	3 cut(s)	477, 656, 733
Vha464I	CTTAAG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	724
XapI	RAATTY	4 cut(s)	83, 324, 659, 899
XceI	RCATGY	1 cut(s)	943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	924
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	300
ZrmI	AGTACT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.