Rw7G015100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004535
Physical Location & Seq
Forward (+)
15024607 .. 15025583
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015100.1

Sequence Viewer

Length: 852 bp
ATGACGACAAACAAAAATTCAAGATTTGACAGATGGGCAGACCTGGATAAAGATGTACTTGTAGGTATATTCATGACACTGAATGTTGTGGAATTAATCCGTGGGGTATCTGTTTGCAAATCTTGGCTGGAAGCAGCTTCGGAACCCTGCCTTTGGAAGACAATTGACTTAAGTAAGCTGGAGGTCAAGAACTTTAACCAACAGCGTGAGCAGTCTAGCCAGAGGGTTATGGATATTGTGAATAGTGCTTTCAGTTTAAGTGGTGGAACTATATCTTGCTTTATTTTCCACTTCTATGCATACATAACAAGTCAGCACTTGGTTTTTCGGGACAACGATATACTAGTTAATGAGTTTGAAGAAGCTGCGAAGAACTGGCCACTTCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTCATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGCGAGCTGAAAATGATGCACCGGTTTGACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGGTCATAAGTCTTCGGTGCAATAGAGTGCACAGGGATGCTATACTTTTCTTGCTCGGGGAATTGAGGCAGTTAGAAGTGTTGAATATAACTCACTGCCTCATTCTGGATCACTTTCCAAAACCTGGTTTTTGGTCTGTGCTCCCTGAGCTTGATGAGTTTGTCCTTCAAGAGGCTTTGCGGCTAAAGAAGTTTCTGTTTTGTCAGATGCGCTCCTGCAATGTTTGCCACTTTCAGATTAATTCAAATGGGCTCTTGTTCTGGACTCAAAACAATGAAGCCATTTGGATAATGGACGAGGTGAGTACCCTTGCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

283

Amino Acids

32.71

Weight (kDa)

5.99

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 2.4e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 656
AciI CCGC 1 cut(s) 712
AclWI GGATC 1 cut(s) 648
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 2 cut(s) 57, 838
AfiI CCNNNNNNNGG 4 cut(s) 153, 637, 656, 703
AflII CTTAAG 1 cut(s) 169
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 7 cut(s) 21, 359, 422, 532, 616, 701, 777
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 3 cut(s) 42, 403, 655
AluBI AGCT 6 cut(s) 137, 178, 365, 411, 466, 682
AluI AGCT 6 cut(s) 137, 178, 365, 411, 466, 682
Alw21I GWGCWC 2 cut(s) 564, 675
Alw44I GTGCAC 1 cut(s) 560
AlwI GGATC 1 cut(s) 648
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 1 cut(s) 377
ApaLI GTGCAC 1 cut(s) 560
ApeKI GCWGC 2 cut(s) 134, 365
ApoI RAATTY 1 cut(s) 16
AseI ATTAAT 2 cut(s) 95, 771
AsiGI ACCGGT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 744
AsuHPI GGTGA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 564
BalI TGGCCA 1 cut(s) 379
BanII GRGCYC 1 cut(s) 786
BbsI GAAGAC 2 cut(s) 164, 536
Bbv12I GWGCWC 2 cut(s) 564, 675
BbvCI CCTCAGC 1 cut(s) 458
BbvI GCAGC 2 cut(s) 146, 352
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 3 cut(s) 44, 405, 657
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 2 cut(s) 216, 344
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 3 cut(s) 135, 366, 713
BlsI GCNGC 3 cut(s) 136, 367, 714
Bme1390I CCNGG 3 cut(s) 44, 405, 657
BmeT110I CYCGRG 1 cut(s) 587
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 3 cut(s) 44, 405, 657
BmsI GCATC 3 cut(s) 465, 559, 729
BpiI GAAGAC 2 cut(s) 164, 536
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 2 cut(s) 458, 678
BpuEI CTTGAG 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 637, 656, 703
Bse118I RCCGGY 1 cut(s) 480
Bse1I ACTGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 757
BseBI CCWGG 3 cut(s) 44, 405, 657
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 4 cut(s) 153, 637, 656, 703
BseMI GCAATG 1 cut(s) 757
BseMII CTCAG 2 cut(s) 472, 669
BseNI ACTGG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 2 cut(s) 146, 352
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 1 cut(s) 379
BshTI ACCGGT 1 cut(s) 480
BsiHKAI GWGCWC 2 cut(s) 564, 675
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 1 cut(s) 481
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 4 cut(s) 153, 637, 656, 703
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 564, 675, 786
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 1 cut(s) 712
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 471, 670
BspHI TCATGA 2 cut(s) 72, 426
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 648
BspTI CTTAAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 757
BsrFI RCCGGY 1 cut(s) 480
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 640
Bst2UI CCWGG 3 cut(s) 44, 405, 657
BstAFI CTTAAG 1 cut(s) 169
BstAPI GCANNNNNTGC 1 cut(s) 756
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 458, 678
BstDSI CCRYGG 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 1 cut(s) 643
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 2 cut(s) 679, 756
BstNI CCWGG 3 cut(s) 44, 405, 657
BstSCI CCNGG 3 cut(s) 42, 403, 655
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 2 cut(s) 146, 352
BstV2I GAAGAC 2 cut(s) 164, 536
BsuRI GGCC 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 2 cut(s) 445, 625
BtsIMutI CAGTG 3 cut(s) 77, 445, 625
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 2 cut(s) 72, 426
CfoI GCGC 1 cut(s) 744
Cfr10I RCCGGY 1 cut(s) 480
CsiI ACCWGGT 1 cut(s) 655
Csp6I GTAC 2 cut(s) 56, 837
CspAI ACCGGT 1 cut(s) 480
CviAII CATG 3 cut(s) 73, 427, 490
CviQI GTAC 2 cut(s) 56, 837
DdeI CTNAG 2 cut(s) 458, 678
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRII CCWGG 3 cut(s) 42, 403, 655
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 786
FaeI CATG 3 cut(s) 76, 430, 493
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 344
FatI CATG 3 cut(s) 72, 426, 489
FauNDI CATATG 1 cut(s) 517
Fnu4HI GCNGC 3 cut(s) 135, 366, 713
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 3 cut(s) 135, 366, 713
FspBI CTAG 2 cut(s) 216, 344
GlaI GCGC 1 cut(s) 743
GluI GCNGC 3 cut(s) 135, 366, 713
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 379
HapII CCGG 1 cut(s) 481
HhaI GCGC 1 cut(s) 744
Hin1II CATG 3 cut(s) 76, 430, 493
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 2 cut(s) 389, 796
HpaII CCGG 1 cut(s) 481
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 3 cut(s) 142, 738, 768
Hpy188III TCNNGA 9 cut(s) 21, 73, 187, 329, 386, 427, 638, 701, 793
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 3 cut(s) 424, 526, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 679, 756
HpyF3I CTNAG 2 cut(s) 458, 678
Hsp92II CATG 3 cut(s) 76, 430, 493
HspAI GCGC 1 cut(s) 742
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 2 cut(s) 678, 749
Lsp1109I GCAGC 2 cut(s) 146, 352
LweI GCATC 3 cut(s) 465, 559, 729
MabI ACCWGGT 1 cut(s) 655
MaeI CTAG 2 cut(s) 216, 344
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 4 cut(s) 169, 371, 382, 536
MfeI CAATTG 2 cut(s) 162, 435
MhlI GDGCHC 3 cut(s) 564, 675, 786
MlsI TGGCCA 1 cut(s) 379
MluCI AATT 7 cut(s) 16, 92, 162, 435, 493, 593, 772
MluNI TGGCCA 1 cut(s) 379
MlyI GAGTC 2 cut(s) 398, 790
MnlI CCTC 7 cut(s) 175, 216, 467, 591, 641, 697, 823
Mox20I TGGCCA 1 cut(s) 379
Mph1103I ATGCAT 1 cut(s) 301
MscI TGGCCA 1 cut(s) 379
MseI TTAA 6 cut(s) 95, 170, 195, 257, 348, 771
MslI CAYNNNNRTG 2 cut(s) 294, 567
Msp20I TGGCCA 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 3 cut(s) 44, 405, 657
MunI CAATTG 2 cut(s) 162, 435
MvaI CCWGG 3 cut(s) 44, 405, 657
MwoI GCNNNNNNNGC 2 cut(s) 679, 756
NdeI CATATG 1 cut(s) 517
NdeII GATC 1 cut(s) 640
NlaIII CATG 3 cut(s) 76, 430, 493
NlaIV GGNNCC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 301
PagI TCATGA 2 cut(s) 72, 426
PflMI CCANNNNNTGG 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 3 cut(s) 136, 367, 714
PleI GAGTC 2 cut(s) 397, 790
PpsI GAGTC 2 cut(s) 397, 790
PshBI ATTAAT 2 cut(s) 95, 771
Psp6I CCWGG 3 cut(s) 42, 403, 655
PspGI CCWGG 3 cut(s) 42, 403, 655
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 57, 838
RsaNI GTAC 2 cut(s) 56, 837
RseI CAYNNNNRTG 2 cut(s) 294, 567
SaqAI TTAA 6 cut(s) 95, 170, 195, 257, 348, 771
SatI GCNGC 3 cut(s) 135, 366, 713
Sau3AI GATC 1 cut(s) 640
SchI GAGTC 2 cut(s) 398, 790
ScrFI CCNGG 3 cut(s) 44, 405, 657
SduI GDGCHC 3 cut(s) 564, 675, 786
SexAI ACCWGGT 1 cut(s) 655
SfaNI GCATC 3 cut(s) 465, 559, 729
SmiMI CAYNNNNRTG 2 cut(s) 294, 567
SmlI CTYRAG 2 cut(s) 169, 386
SmoI CTYRAG 2 cut(s) 169, 386
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 7 cut(s) 16, 92, 162, 435, 493, 593, 772
SsiI CCGC 1 cut(s) 712
SspMI CTAG 2 cut(s) 216, 344
StyD4I CCNGG 3 cut(s) 42, 403, 655
TasI AATT 7 cut(s) 16, 92, 162, 435, 493, 593, 772
TatI WGTACW 1 cut(s) 55
TauI GCSGC 1 cut(s) 715
Tru1I TTAA 6 cut(s) 95, 170, 195, 257, 348, 771
Tru9I TTAA 6 cut(s) 95, 170, 195, 257, 348, 771
TscAI CASTG 3 cut(s) 84, 452, 632
TseI GCWGC 2 cut(s) 134, 365
TspDTI ATGAA 4 cut(s) 61, 443, 506, 822
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 3 cut(s) 84, 452, 632
Van91I CCANNNNNTGG 1 cut(s) 656
Vha464I CTTAAG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 560
VspI ATTAAT 2 cut(s) 95, 771
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XspI CTAG 2 cut(s) 216, 344
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.