Rh7AG172100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004535
Physical Location & Seq
Forward (+)
14923394 .. 14923912
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG172100.1

Sequence Viewer

Length: 363 bp
ATGACGACAAACAAAAACTCAAGATTTGACAGATGGGCAGACCTGGATAAAGATGTACTTGTAAGTATATTCATGACACTGAATGTTGTGGAATTAATCCGTGGGACATCTGTTTGCAAATCTTGGCTGGAAGCAGCTTCGGAACCCTGCCGTTGGAAGACAGTTGACTTAAGTAAGCTGGAGGTCAAGAACTTTAACCAACAGCGTGAGCAGTCTAGCCAGAGGGTTATGGATATTGTGAATAGTGCTTTCAGTTTTAAGTGCACCCCGAATCTCAAAAGACTTGTTCTACCAGTTCGGGACAACGATATACTAGTTAATGAGTTTGAAGAAGCTGCAAAGAACTGGCCACGTACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

120

Amino Acids

13.94

Weight (kDa)

8.52

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 5.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 347
AfaI GTAC 2 cut(s) 57, 355
AfiI CCNNNNNNNGG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 329
AhlI ACTAGT 1 cut(s) 313
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 3 cut(s) 137, 178, 335
AluI AGCT 3 cut(s) 137, 178, 335
Alw21I GWGCWC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 262
AoxI GGCC 1 cut(s) 347
ApaLI GTGCAC 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 134, 335
AseI ATTAAT 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 146, 322
BccI CCATC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 44
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 2 cut(s) 216, 314
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 135, 336
BlsI GCNGC 2 cut(s) 136, 337
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 4
BsaAI YACGTR 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 293, 350
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 293, 350
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 2 cut(s) 146, 322
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 266
BslFI GGGAC 2 cut(s) 118, 314
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 2 cut(s) 118, 314
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 266
BspANI GGCC 1 cut(s) 349
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 293, 350
BssECI CCNNGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 353
BstDSI CCRYGG 1 cut(s) 100
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 146, 322
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 72
Csp6I GTAC 2 cut(s) 56, 354
CviAII CATG 1 cut(s) 73
CviJI RGCY 6 cut(s) 127, 137, 178, 219, 335, 349
CviKI_1 RGCY 6 cut(s) 127, 137, 178, 219, 335, 349
CviQI GTAC 2 cut(s) 56, 354
EaeI YGGCCR 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 76
FaiI YATR 4 cut(s) 68, 74, 230, 311
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 118, 314
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 135, 336
Fsp4HI GCNGC 2 cut(s) 135, 336
FspBI CTAG 2 cut(s) 216, 314
GluI GCNGC 2 cut(s) 135, 336
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 349
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 166, 264
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 5 cut(s) 21, 73, 187, 299, 360
Hpy8I GTNNAC 2 cut(s) 166, 264
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 117, 264, 338
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 76
LpnPI CCDG 8 cut(s) 29, 56, 113, 160, 164, 233, 306, 331
Lsp1109I GCAGC 2 cut(s) 146, 322
MaeI CTAG 2 cut(s) 216, 314
MaeII ACGT 1 cut(s) 352
MboII GAAGA 2 cut(s) 169, 341
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 2 cut(s) 175, 216
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MseI TTAA 5 cut(s) 95, 170, 195, 258, 318
Msp20I TGGCCA 1 cut(s) 349
MspCI CTTAAG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 144
PagI TCATGA 1 cut(s) 72
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 2 cut(s) 136, 337
Ppu21I YACGTR 1 cut(s) 353
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 57, 355
RsaNI GTAC 2 cut(s) 56, 354
SaqAI TTAA 5 cut(s) 95, 170, 195, 258, 318
SatI GCNGC 2 cut(s) 135, 336
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 266
SetI ASST 6 cut(s) 45, 139, 180, 186, 337, 355
SmlI CTYRAG 2 cut(s) 19, 169
SmoI CTYRAG 2 cut(s) 19, 169
SpeI ACTAGT 1 cut(s) 313
Sse9I AATT 1 cut(s) 92
SspMI CTAG 2 cut(s) 216, 314
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 355
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 5 cut(s) 95, 170, 195, 258, 318
Tru9I TTAA 5 cut(s) 95, 170, 195, 258, 318
TscAI CASTG 1 cut(s) 84
TseI GCWGC 2 cut(s) 134, 335
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 84
Vha464I CTTAAG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 95
XspI CTAG 2 cut(s) 216, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.