RchiOBHm_Chr7g0198621

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004535
Physical Location & Seq
Forward (+)
16582168 .. 16582946
779 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17770

Sequence Viewer

Length: 585 bp
ATGACGACAAACAAAAATTCAAGATTTGACATATGGGCAGACCTGGATAAAGATGTACTTGTAGGTATATTCATGACACTGAATGTTGTGGAATTAATCCGTGGGGTATCTGTTTGCAAATCTTGGCTTGAAGCAGCTTCGGAACCCTGCCTTTGGAAGACAATTGACTTAAGTAAGCTGGAGGTCAAGAACTTTAACCAACAGCGTGAGCAGTCTAGCCAGAGGGTTATGGATATTGTGAATAGTTCTTTCAGTTTAAGTGAAGCTGCGAAGAACTGGCCACTTCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTCATGAAGGCAATTGGTCAGCACTGCAAGAACCTCAGAGAGCTGAAAATGATGCACCGGTTTGACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGGTCATAAGTCTTCGGTGCAATAGAGTGCACAGGGATGCTGTACTTTTCTTGCAATATTTAAACTTGCCCATTGATCTAGCTAGAAAAGAGTTAACATATCCTGGGACACATTGTTGTGTTGCTGAACTTGTTAGAATAAGAAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

194

Amino Acids

22.26

Weight (kDa)

8.47

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 57 1.3e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 16, 577
AfaI GTAC 2 cut(s) 57, 477
AfiI CCNNNNNNNGG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 169
AgeI ACCGGT 1 cut(s) 381
AgsI TTSAA 4 cut(s) 21, 131, 323, 433
AjnI CCWGG 3 cut(s) 42, 304, 535
AluBI AGCT 6 cut(s) 137, 178, 266, 312, 367, 515
AluI AGCT 6 cut(s) 137, 178, 266, 312, 367, 515
Alw21I GWGCWC 1 cut(s) 465
Alw44I GTGCAC 1 cut(s) 461
AoxI GGCC 1 cut(s) 278
ApaLI GTGCAC 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 134, 266
ApoI RAATTY 2 cut(s) 16, 577
AseI ATTAAT 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 280
BbsI GAAGAC 2 cut(s) 164, 437
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 146, 253
BciT130I CCWGG 3 cut(s) 44, 306, 537
BfaI CTAG 3 cut(s) 216, 512, 516
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 135, 267
BlsI GCNGC 2 cut(s) 136, 268
Bme1390I CCNGG 3 cut(s) 44, 306, 537
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 3 cut(s) 44, 306, 537
BmsI GCATC 2 cut(s) 366, 460
BpiI GAAGAC 2 cut(s) 164, 437
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 100, 536
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 3 cut(s) 44, 306, 537
BseDI CCNNGG 2 cut(s) 100, 536
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 2 cut(s) 146, 253
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 1 cut(s) 280
BshTI ACCGGT 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 553
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 1 cut(s) 508
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 372
BspHI TCATGA 2 cut(s) 72, 327
BspLI GGNNCC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 100, 536
BssMI GATC 1 cut(s) 508
Bst2UI CCWGG 3 cut(s) 44, 306, 537
BstAFI CTTAAG 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 359
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 1 cut(s) 511
BstMBI GATC 1 cut(s) 508
BstNI CCWGG 3 cut(s) 44, 306, 537
BstSCI CCNGG 3 cut(s) 42, 304, 535
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 146, 253
BstV2I GAAGAC 2 cut(s) 164, 437
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 77, 346
CciI TCATGA 2 cut(s) 72, 327
Cfr10I RCCGGY 1 cut(s) 381
Csp6I GTAC 2 cut(s) 56, 476
CspAI ACCGGT 1 cut(s) 381
CviAII CATG 3 cut(s) 73, 328, 391
CviJI RGCY 9 cut(s) 127, 137, 178, 219, 266, 280, 312, 367, 515
CviKI_1 RGCY 9 cut(s) 127, 137, 178, 219, 266, 280, 312, 367, 515
CviQI GTAC 2 cut(s) 56, 476
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
DraI TTTAAA 1 cut(s) 495
EaeI YGGCCR 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 42, 304, 535
FaeI CATG 3 cut(s) 76, 331, 394
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 553
FatI CATG 3 cut(s) 72, 327, 390
FauNDI CATATG 2 cut(s) 32, 418
Fnu4HI GCNGC 2 cut(s) 135, 267
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 2 cut(s) 135, 267
FspBI CTAG 3 cut(s) 216, 512, 516
GluI GCNGC 2 cut(s) 135, 267
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 280
HapII CCGG 1 cut(s) 382
Hin1II CATG 3 cut(s) 76, 331, 394
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 1 cut(s) 290
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 463, 528
Hpy188I TCNGA 3 cut(s) 142, 362, 584
Hpy188III TCNNGA 5 cut(s) 21, 73, 187, 287, 328
Hpy8I GTNNAC 2 cut(s) 463, 528
HpyAV CCTTC 2 cut(s) 325, 427
HpyCH4V TGCA 9 cut(s) 117, 351, 379, 401, 416, 422, 453, 463, 487
HpyF3I CTNAG 1 cut(s) 359
Hsp92II CATG 3 cut(s) 76, 331, 394
KspAI GTTAAC 1 cut(s) 528
Kzo9I GATC 1 cut(s) 508
Lsp1109I GCAGC 2 cut(s) 146, 253
LweI GCATC 2 cut(s) 366, 460
MaeI CTAG 3 cut(s) 216, 512, 516
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 3 cut(s) 169, 283, 437
MfeI CAATTG 2 cut(s) 162, 336
MhlI GDGCHC 1 cut(s) 465
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 6 cut(s) 16, 92, 162, 336, 394, 577
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 3 cut(s) 175, 216, 368
Mox20I TGGCCA 1 cut(s) 280
MscI TGGCCA 1 cut(s) 280
MseI TTAA 6 cut(s) 95, 170, 195, 257, 494, 527
MslI CAYNNNNRTG 2 cut(s) 468, 549
Msp20I TGGCCA 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 3 cut(s) 44, 306, 537
MunI CAATTG 2 cut(s) 162, 336
MvaI CCWGG 3 cut(s) 44, 306, 537
NdeI CATATG 2 cut(s) 32, 418
NdeII GATC 1 cut(s) 508
NlaIII CATG 3 cut(s) 76, 331, 394
NlaIV GGNNCC 1 cut(s) 144
PagI TCATGA 2 cut(s) 72, 327
PinAI ACCGGT 1 cut(s) 381
PkrI GCNGC 2 cut(s) 136, 268
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 3 cut(s) 42, 304, 535
PspGI CCWGG 3 cut(s) 42, 304, 535
PspN4I GGNNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 57, 477
RsaNI GTAC 2 cut(s) 56, 476
RseI CAYNNNNRTG 2 cut(s) 468, 549
SaqAI TTAA 6 cut(s) 95, 170, 195, 257, 494, 527
SatI GCNGC 2 cut(s) 135, 267
Sau3AI GATC 1 cut(s) 508
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 44, 306, 537
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 2 cut(s) 366, 460
SmiMI CAYNNNNRTG 2 cut(s) 468, 549
SmlI CTYRAG 2 cut(s) 169, 287
SmoI CTYRAG 2 cut(s) 169, 287
Sse9I AATT 6 cut(s) 16, 92, 162, 336, 394, 577
SspI AATATT 1 cut(s) 491
SspMI CTAG 3 cut(s) 216, 512, 516
StyD4I CCNGG 3 cut(s) 42, 304, 535
TasI AATT 6 cut(s) 16, 92, 162, 336, 394, 577
TatI WGTACW 2 cut(s) 55, 475
Tru1I TTAA 6 cut(s) 95, 170, 195, 257, 494, 527
Tru9I TTAA 6 cut(s) 95, 170, 195, 257, 494, 527
TscAI CASTG 2 cut(s) 84, 353
TseI GCWGC 2 cut(s) 134, 266
TspDTI ATGAA 3 cut(s) 61, 344, 407
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 84, 353
Vha464I CTTAAG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 461
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 2 cut(s) 16, 577
XspI CTAG 3 cut(s) 216, 512, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.