Rh5DG260200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
31073521 .. 31073781
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG260200.1

Sequence Viewer

Length: 261 bp
ATGGATGTAGGAAGATGTCTAGAGGCGGAGATGCACGGGAGGATGTTGCTGGGGCTTTTCCCAATTGGGCTTCCAGCTGGGCTGTTTTGGATGTGGGCCTCTCTGTGGGTTTTAGGATTGGGTTGCTTCGGGCCCAAAAGGCCTTTAGGGCTGCCTTGTCCTCCTGCTGGACTGATTGTTGTTGGGCTCCTTGTTTTGGGCTCCCCGAGGTTGGGCTTCCCAGAGCTGGAGGTGAATGCGGGCTGGCATTTGACCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.22

Weight (kDa)

6.7

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 26, 239
AfiI CCNNNNNNNGG 6 cut(s) 105, 167, 196, 211, 212, 226
AluBI AGCT 2 cut(s) 77, 226
AluI AGCT 2 cut(s) 77, 226
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 3 cut(s) 96, 131, 140
ApaI GGGCCC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 96, 131, 132
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 135
BanII GRGCYC 3 cut(s) 135, 189, 203
BbvI GCAGC 1 cut(s) 138
BfaI CTAG 1 cut(s) 20
BglI GCCNNNNNGGC 2 cut(s) 139, 148
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 96, 131, 132
BmiI GGNNCC 3 cut(s) 133, 188, 202
BmsI GCATC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 6 cut(s) 105, 167, 196, 211, 212, 226
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 3 cut(s) 10, 48, 96
BseLI CCNNNNNNNGG 6 cut(s) 105, 167, 196, 211, 212, 226
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 2 cut(s) 49, 77
BshFI GGCC 3 cut(s) 98, 133, 142
BsiHKCI CYCGRG 1 cut(s) 205
BslI CCNNNNNNNGG 6 cut(s) 105, 167, 196, 211, 212, 226
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 3 cut(s) 98, 133, 142
BsoBI CYCGRG 1 cut(s) 205
Bsp120I GGGCCC 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 135, 189, 203
BspACI CCGC 2 cut(s) 26, 239
BspANI GGCC 3 cut(s) 98, 133, 142
BspLI GGNNCC 3 cut(s) 133, 188, 202
BssECI CCNNGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 241, 245
BstF5I GGATG 3 cut(s) 10, 48, 96
BstMWI GCNNNNNNNGC 2 cut(s) 139, 148
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 3 cut(s) 98, 133, 142
BtsCI GGATG 3 cut(s) 10, 48, 96
Cac8I GCNNGC 2 cut(s) 241, 245
Cfr13I GGNCC 3 cut(s) 96, 131, 132
EciI GGCGGA 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 142
Eco24I GRGCYC 3 cut(s) 135, 189, 203
Eco88I CYCGRG 1 cut(s) 205
EcoT38I GRGCYC 3 cut(s) 135, 189, 203
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 3 cut(s) 17, 55, 103
FriOI GRGCYC 3 cut(s) 135, 189, 203
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 152
GsaI CCCAGC 2 cut(s) 53, 81
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 3 cut(s) 98, 133, 142
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 148
LmnI GCTCC 2 cut(s) 192, 206
LpnPI CCDG 8 cut(s) 35, 63, 87, 153, 177, 212, 229, 234
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 20
MboII GAAGA 1 cut(s) 24
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 3 cut(s) 135, 189, 203
MluCI AATT 1 cut(s) 63
MnlI CCTC 6 cut(s) 16, 33, 109, 171, 201, 223
MspA1I CMGCKG 1 cut(s) 77
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 139, 148
NlaIV GGNNCC 3 cut(s) 133, 188, 202
PceI AGGCCT 1 cut(s) 142
PctI GAATGC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 153
PspFI CCCAGC 2 cut(s) 49, 77
PspN4I GGNNCC 3 cut(s) 133, 188, 202
PspOMI GGGCCC 1 cut(s) 131
PspPI GGNCC 3 cut(s) 96, 131, 132
PvuII CAGCTG 1 cut(s) 77
SatI GCNGC 1 cut(s) 152
Sau96I GGNCC 3 cut(s) 96, 131, 132
SduI GDGCHC 3 cut(s) 135, 189, 203
SetI ASST 4 cut(s) 79, 212, 228, 234
SfaNI GCATC 1 cut(s) 21
SfiI GGCCNNNNNGGCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 63
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 2 cut(s) 26, 239
SspMI CTAG 1 cut(s) 20
StuI AGGCCT 1 cut(s) 142
TaaI ACNGT 1 cut(s) 256
TasI AATT 1 cut(s) 63
TseI GCWGC 1 cut(s) 151
XbaI TCTAGA 1 cut(s) 19
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.