Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004535

Physical Location & Seq

Genomic Coordinates Forward (+)

77517488 .. 77519270

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAACTACAAACTGCAAAGGGGTCTAATTCTACCGAAGACTACTGTATGCAGACGTATCAACTATACAAGGCTACAAGCTCTAGGATTTTGTCAGATAAGGATGAGCTAGCAATTGACATGTGTGACCTGTATCTATATCTGAGGCCGAGCTCTATCGGCGTGGTTCGAGTTTGGTCTGAATTGGATAGGCGCTACTGGGTTTTAGATCGTGGTCGTCAGACTACCGATGGAGGTGGGGATTGCATCTCCTCTAGGTTTGGTGGATCTTTCGGCGGCTCCAGTTCTGATTGGTTTGGATGTGATGGTTCTGTTCCTGCGTCTACATTCTGGGATTGGTGTGAGGATGGTGGCGGTCGTATGGCTTTGAGGTGGCTGGAGATGAGGTCTGAGCTAATCTTCTTGGGCCGGAACCCTTTGATGGTAGGCGGCGGCTTAGGGATTGGGAGTTGGATTCGGGATCGTCTTGGTCTTGTTGTAGGGAATCATTCTCCCAGGTGGACGCAGGCGGAGGTGAGGTTGTCGTCGGCGATGGATGCAGCAAGATGTCTGGAGGCGGCGATGCAAGGGAGGATGTTGCCAGGGTTTTTCCGAATTGGGCCTCCAGCTGGGCTGTTCTTGATGTGGGCCTCTCTGTGGGCTTTAGGATTGGGTTGCTTCGGGCCCAAAAGGCCTTTAGGGTTGCCTTGTCCTCCTGTTGGGATGACCGTTGTTGGGCTCCTTGCTTTGGGCTCCCTAAGGCTCGGCTTCACAGAGGTGGAGGTGCATGCGGGCTGGCAGTTGACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

28.81

Weight (kDa)

6.15

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32353 FvH4_5g01901 FvH4_5g01910 FvH4_5g01910
rosa_chinensis	RchiOBHm_Chr7g0198621 RchiOBHm_Chr7g0198631
rosa_laevigata	RLG00000003855 RLG00000003856 RLG00000021721
rosa_multiflora	Rmu_sc0004229.1_g000002 Rmu_sc0004229.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018490 Rroxscaffold_1G00021280 Rroxscaffold_3G00257590 Rroxscaffold_3G00257600 Rroxscaffold_3G00257610
rosa_rugosa	Rorug07G0048500 Rorug07G0048500 Rorug07G0048500
rosa_samantha	Rh5DG260200 Rh7AG172100 Rh7AG172200 Rh7BG175500 Rh7BG175600 Rh7BG175700 Rh7BG175800 Rh7BG420300 Rh7CG181600 Rh7CG181700 Rh7DG174600
rosa_wichuraiana	Rw7G015100 Rw7G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	7 cut(s)	276, 354, 429, 432, 509, 557, 770
AclWI	GGATC	2 cut(s)	274, 468
AfiI	CCNNNNNNNGG	6 cut(s)	421, 608, 636, 698, 714, 727
AflIII	ACRYGT	1 cut(s)	120
AjnI	CCWGG	2 cut(s)	494, 580
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	6 cut(s)	81, 109, 153, 394, 608, 788
AluI	AGCT	6 cut(s)	81, 109, 153, 394, 608, 788
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	274, 468
AoxI	GGCC	6 cut(s)	146, 406, 599, 627, 662, 671
ApaI	GGGCCC	1 cut(s)	666
ApeKI	GCWGC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	5 cut(s)	406, 599, 627, 662, 663
AsuHPI	GGTGA	1 cut(s)	526
AsuNHI	GCTAGC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	666
BanII	GRGCYC	4 cut(s)	155, 666, 720, 734
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	5 cut(s)	224, 299, 341, 415, 526
BciT130I	CCWGG	2 cut(s)	496, 582
BfaI	CTAG	3 cut(s)	84, 110, 255
BfoI	RGCGCY	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	5 cut(s)	277, 430, 433, 540, 558
BlsI	GCNGC	5 cut(s)	278, 431, 434, 541, 559
Bme1390I	CCNGG	2 cut(s)	496, 582
BmgT120I	GGNCC	5 cut(s)	406, 599, 627, 662, 663
BmiI	GGNNCC	5 cut(s)	280, 413, 664, 719, 733
BmrFI	CCNGG	2 cut(s)	496, 582
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	255, 526, 552
BmtI	GCTAGC	1 cut(s)	113
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	4 cut(s)	265, 398, 572, 588
Bpu10I	CCTNAGC	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	494, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	371, 401, 503, 533
Bsc4I	CCNNNNNNNGG	6 cut(s)	421, 608, 636, 698, 714, 727
Bse1I	ACTGG	2 cut(s)	203, 282
Bse21I	CCTNAGG	1 cut(s)	737
BseBI	CCWGG	2 cut(s)	496, 582
BseDI	CCNNGG	2 cut(s)	494, 581
BseGI	GGATG	6 cut(s)	109, 305, 352, 541, 579, 708
BseLI	CCNNNNNNNGG	6 cut(s)	421, 608, 636, 698, 714, 727
BseMII	CTCAG	2 cut(s)	134, 381
BseNI	ACTGG	2 cut(s)	203, 282
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	1 cut(s)	551
BseYI	CCCAGC	1 cut(s)	608
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	6 cut(s)	148, 408, 601, 629, 664, 673
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	409
BslI	CCNNNNNNNGG	6 cut(s)	421, 608, 636, 698, 714, 727
BsnI	GGCC	6 cut(s)	148, 408, 601, 629, 664, 673
Bsp120I	GGGCCC	1 cut(s)	662
Bsp1286I	GDGCHC	4 cut(s)	155, 666, 720, 734
Bsp143I	GATC	3 cut(s)	208, 266, 460
BspACI	CCGC	7 cut(s)	276, 354, 429, 432, 509, 557, 770
BspANI	GGCC	6 cut(s)	148, 408, 601, 629, 664, 673
BspCNI	CTCAG	2 cut(s)	135, 382
BspLI	GGNNCC	5 cut(s)	280, 413, 664, 719, 733
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	274, 468
BsrI	ACTGG	2 cut(s)	203, 282
BssECI	CCNNGG	2 cut(s)	494, 581
BssMI	GATC	3 cut(s)	208, 266, 460
Bst2UI	CCWGG	2 cut(s)	496, 582
Bst4CI	ACNGT	2 cut(s)	47, 709
BstC8I	GCNNGC	5 cut(s)	111, 507, 768, 772, 776
BstDEI	CTNAG	4 cut(s)	143, 390, 436, 737
BstF5I	GGATG	6 cut(s)	109, 305, 352, 541, 579, 708
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	211, 269, 463
BstMBI	GATC	3 cut(s)	208, 266, 460
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 536, 670
BstNI	CCWGG	2 cut(s)	496, 582
BstNSI	RCATGY	2 cut(s)	124, 770
BstSCI	CCNGG	2 cut(s)	494, 580
BstSLI	GKGCMC	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	551
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
Bsu36I	CCTNAGG	1 cut(s)	737
BsuRI	GGCC	6 cut(s)	148, 408, 601, 629, 664, 673
BtgZI	GCGATG	2 cut(s)	545, 575
BtsCI	GGATG	6 cut(s)	109, 305, 352, 541, 579, 708
Cac8I	GCNNGC	5 cut(s)	111, 507, 768, 772, 776
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	5 cut(s)	406, 599, 627, 662, 663
CseI	GACGC	2 cut(s)	309, 511
CviAII	CATG	2 cut(s)	121, 767
DdeI	CTNAG	4 cut(s)	143, 390, 436, 737
DpnI	GATC	3 cut(s)	210, 268, 462
DpnII	GATC	3 cut(s)	208, 266, 460
EciI	GGCGGA	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	4 cut(s)	155, 666, 720, 734
Eco53kI	GAGCTC	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	494, 580
EcoT38I	GRGCYC	4 cut(s)	155, 666, 720, 734
FaeI	CATG	2 cut(s)	124, 770
FaiI	YATR	6 cut(s)	50, 67, 122, 139, 362, 768
FatI	CATG	2 cut(s)	120, 766
FauI	CCCGC	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	5 cut(s)	277, 430, 433, 540, 558
FokI	GGATG	6 cut(s)	116, 312, 359, 548, 586, 715
FriOI	GRGCYC	4 cut(s)	155, 666, 720, 734
Fsp4HI	GCNGC	5 cut(s)	277, 430, 433, 540, 558
FspBI	CTAG	3 cut(s)	84, 110, 255
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	5 cut(s)	277, 430, 433, 540, 558
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	4 cut(s)	265, 398, 572, 588
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	6 cut(s)	148, 408, 601, 629, 664, 673
HapII	CCGG	1 cut(s)	409
HgaI	GACGC	2 cut(s)	309, 511
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	124, 770
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HinfI	GANTC	2 cut(s)	454, 484
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	3 cut(s)	324, 501, 783
Hpy188I	TCNGA	7 cut(s)	97, 144, 181, 222, 289, 391, 593
Hpy188III	TCNNGA	3 cut(s)	458, 551, 619
Hpy8I	GTNNAC	3 cut(s)	324, 501, 783
Hpy99I	CGWCG	1 cut(s)	529
HpyCH4III	ACNGT	2 cut(s)	47, 709
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	6 cut(s)	17, 52, 246, 539, 565, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 536, 670
HpyF3I	CTNAG	4 cut(s)	143, 390, 436, 737
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	124, 770
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	208, 266, 460
LmnI	GCTCC	3 cut(s)	284, 723, 737
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	3 cut(s)	255, 526, 552
MaeI	CTAG	3 cut(s)	84, 110, 255
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	3 cut(s)	210, 268, 462
MboI	GATC	3 cut(s)	208, 266, 460
MboII	GAAGA	2 cut(s)	50, 391
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	4 cut(s)	155, 666, 720, 734
MluCI	AATT	4 cut(s)	28, 114, 182, 594
MmeI	TCCRAC	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	2 cut(s)	496, 582
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	2 cut(s)	496, 582
MwoI	GCNNNNNNNGC	3 cut(s)	159, 536, 670
NdeII	GATC	3 cut(s)	208, 266, 460
NheI	GCTAGC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	124, 770
NlaIV	GGNNCC	5 cut(s)	280, 413, 664, 719, 733
NmeAIII	GCCGAG	2 cut(s)	174, 723
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	2 cut(s)	124, 770
OliI	CACNNNNGTG	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	770
PceI	AGGCCT	1 cut(s)	673
PciI	ACATGT	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	454, 484
PkrI	GCNGC	5 cut(s)	278, 431, 434, 541, 559
PscI	ACATGT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	494, 580
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	2 cut(s)	494, 580
PspN4I	GGNNCC	5 cut(s)	280, 413, 664, 719, 733
PspOMI	GGGCCC	1 cut(s)	662
PspPI	GGNCC	5 cut(s)	406, 599, 627, 662, 663
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	755
SacI	GAGCTC	1 cut(s)	155
SatI	GCNGC	5 cut(s)	277, 430, 433, 540, 558
Sau3AI	GATC	3 cut(s)	208, 266, 460
Sau96I	GGNCC	5 cut(s)	406, 599, 627, 662, 663
ScrFI	CCNGG	2 cut(s)	496, 582
SduI	GDGCHC	4 cut(s)	155, 666, 720, 734
SfaNI	GCATC	3 cut(s)	255, 526, 552
SfiI	GGCCNNNNNGGCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	4 cut(s)	28, 114, 182, 594
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	7 cut(s)	276, 354, 429, 432, 509, 557, 770
SspMI	CTAG	3 cut(s)	84, 110, 255
SstI	GAGCTC	1 cut(s)	155
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	2 cut(s)	494, 580
TaaI	ACNGT	2 cut(s)	47, 709
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	169
TasI	AATT	4 cut(s)	28, 114, 182, 594
TauI	GCSGC	4 cut(s)	279, 432, 435, 560
TfiI	GAWTC	2 cut(s)	454, 484
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	125
XceI	RCATGY	2 cut(s)	124, 770
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	3 cut(s)	84, 110, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.