DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 264 |
| Acc36I | ACCTGC | 1 cut(s) | 175 |
| AciI | CCGC | 2 cut(s) | 78, 100 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcyI | GRCGYC | 1 cut(s) | 261 |
| AgsI | TTSAA | 3 cut(s) | 72, 182, 214 |
| AjiI | CACGTC | 1 cut(s) | 158 |
| AluBI | AGCT | 1 cut(s) | 404 |
| AluI | AGCT | 1 cut(s) | 404 |
| Alw21I | GWGCWC | 1 cut(s) | 406 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AspS9I | GGNCC | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 1 cut(s) | 118 |
| AvaII | GGWCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 1 cut(s) | 406 |
| Bbv12I | GWGCWC | 1 cut(s) | 406 |
| BceAI | ACGGC | 1 cut(s) | 91 |
| BciVI | GTATCC | 1 cut(s) | 378 |
| BclI | TGATCA | 1 cut(s) | 195 |
| BfuAI | ACCTGC | 1 cut(s) | 175 |
| BfuI | GTATCC | 1 cut(s) | 378 |
| Bme18I | GGWCC | 1 cut(s) | 83 |
| BmgBI | CACGTC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 1 cut(s) | 83 |
| BmsI | GCATC | 1 cut(s) | 309 |
| BpuEI | CTTGAG | 1 cut(s) | 390 |
| Bsa29I | ATCGAT | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 1 cut(s) | 261 |
| Bse3DI | GCAATG | 4 cut(s) | 6, 287, 354, 371 |
| BseCI | ATCGAT | 1 cut(s) | 24 |
| BseGI | GGATG | 1 cut(s) | 300 |
| BseMI | GCAATG | 4 cut(s) | 6, 287, 354, 371 |
| BseRI | GAGGAG | 2 cut(s) | 256, 350 |
| BsgI | GTGCAG | 1 cut(s) | 138 |
| BshVI | ATCGAT | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 1 cut(s) | 406 |
| BsiSI | CCGG | 1 cut(s) | 225 |
| BslFI | GGGAC | 2 cut(s) | 272, 299 |
| BsmFI | GGGAC | 2 cut(s) | 272, 299 |
| Bsp1286I | GDGCHC | 1 cut(s) | 406 |
| Bsp143I | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| BspACI | CCGC | 2 cut(s) | 78, 100 |
| BspDI | ATCGAT | 1 cut(s) | 24 |
| BspMI | ACCTGC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 4 cut(s) | 6, 287, 354, 371 |
| BssMI | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| BssNI | GRCGYC | 1 cut(s) | 261 |
| Bst4CI | ACNGT | 1 cut(s) | 202 |
| BstACI | GRCGYC | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 1 cut(s) | 222 |
| BstF5I | GGATG | 1 cut(s) | 300 |
| BstKTI | GATC | 5 cut(s) | 24, 55, 178, 187, 198 |
| BstMBI | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| Bsu15I | ATCGAT | 1 cut(s) | 24 |
| BsuI | GTATCC | 1 cut(s) | 378 |
| BsuTUI | ATCGAT | 1 cut(s) | 24 |
| BtrI | CACGTC | 1 cut(s) | 158 |
| BtsCI | GGATG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 198 |
| BveI | ACCTGC | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 1 cut(s) | 83 |
| ClaI | ATCGAT | 1 cut(s) | 24 |
| CviAII | CATG | 1 cut(s) | 320 |
| CviJI | RGCY | 2 cut(s) | 224, 404 |
| CviKI_1 | RGCY | 2 cut(s) | 224, 404 |
| DpnI | GATC | 5 cut(s) | 23, 54, 177, 186, 197 |
| DpnII | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| DraI | TTTAAA | 1 cut(s) | 385 |
| Ecl136II | GAGCTC | 1 cut(s) | 404 |
| Eco24I | GRGCYC | 1 cut(s) | 406 |
| Eco32I | GATATC | 1 cut(s) | 356 |
| Eco47I | GGWCC | 1 cut(s) | 83 |
| Eco53kI | GAGCTC | 1 cut(s) | 404 |
| EcoICRI | GAGCTC | 1 cut(s) | 404 |
| EcoRV | GATATC | 1 cut(s) | 356 |
| EcoT22I | ATGCAT | 1 cut(s) | 325 |
| EcoT38I | GRGCYC | 1 cut(s) | 406 |
| FaeI | CATG | 1 cut(s) | 323 |
| FaiI | YATR | 8 cut(s) | 20, 194, 218, 309, 315, 321, 394, 396 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 289, 321 |
| FaqI | GGGAC | 2 cut(s) | 272, 299 |
| FatI | CATG | 1 cut(s) | 319 |
| FauI | CCCGC | 1 cut(s) | 93 |
| FbaI | TGATCA | 1 cut(s) | 195 |
| FokI | GGATG | 1 cut(s) | 287 |
| FriOI | GRGCYC | 1 cut(s) | 406 |
| HapII | CCGG | 1 cut(s) | 225 |
| Hin1I | GRCGYC | 1 cut(s) | 261 |
| Hin1II | CATG | 1 cut(s) | 323 |
| HincII | GTYRAC | 2 cut(s) | 106, 112 |
| HindII | GTYRAC | 2 cut(s) | 106, 112 |
| HinfI | GANTC | 2 cut(s) | 59, 92 |
| HpaI | GTTAAC | 1 cut(s) | 106 |
| HpaII | CCGG | 1 cut(s) | 225 |
| HphI | GGTGA | 1 cut(s) | 118 |
| Hpy166II | GTNNAC | 2 cut(s) | 106, 112 |
| Hpy188I | TCNGA | 1 cut(s) | 189 |
| Hpy188III | TCNNGA | 5 cut(s) | 14, 50, 56, 173, 182 |
| Hpy8I | GTNNAC | 2 cut(s) | 106, 112 |
| HpyAV | CCTTC | 2 cut(s) | 240, 267 |
| HpyCH4III | ACNGT | 1 cut(s) | 202 |
| HpyCH4IV | ACGT | 3 cut(s) | 108, 157, 261 |
| HpyCH4V | TGCA | 3 cut(s) | 155, 220, 323 |
| HpySE526I | ACGT | 3 cut(s) | 108, 157, 261 |
| Hsp92I | GRCGYC | 1 cut(s) | 261 |
| Hsp92II | CATG | 1 cut(s) | 323 |
| Ksp22I | TGATCA | 1 cut(s) | 195 |
| KspAI | GTTAAC | 1 cut(s) | 106 |
| Kzo9I | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| LpnPI | CCDG | 8 cut(s) | 48, 63, 99, 180, 238, 390, 412, 422 |
| LweI | GCATC | 1 cut(s) | 309 |
| MaeII | ACGT | 3 cut(s) | 108, 157, 261 |
| MalI | GATC | 5 cut(s) | 23, 54, 177, 186, 197 |
| MboI | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| MboII | GAAGA | 2 cut(s) | 170, 352 |
| MhlI | GDGCHC | 1 cut(s) | 406 |
| MluCI | AATT | 2 cut(s) | 138, 380 |
| MlyI | GAGTC | 2 cut(s) | 68, 86 |
| MnlI | CCTC | 2 cut(s) | 234, 328 |
| Mph1103I | ATGCAT | 1 cut(s) | 325 |
| MseI | TTAA | 2 cut(s) | 105, 384 |
| MslI | CAYNNNNRTG | 1 cut(s) | 318 |
| MspI | CCGG | 1 cut(s) | 225 |
| NdeII | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| NlaIII | CATG | 1 cut(s) | 323 |
| NsiI | ATGCAT | 1 cut(s) | 325 |
| PleI | GAGTC | 2 cut(s) | 67, 86 |
| PpsI | GAGTC | 2 cut(s) | 67, 86 |
| Psp124BI | GAGCTC | 1 cut(s) | 406 |
| PspPI | GGNCC | 1 cut(s) | 83 |
| RseI | CAYNNNNRTG | 1 cut(s) | 318 |
| SacI | GAGCTC | 1 cut(s) | 406 |
| SaqAI | TTAA | 2 cut(s) | 105, 384 |
| Sau3AI | GATC | 5 cut(s) | 21, 52, 175, 184, 195 |
| Sau96I | GGNCC | 1 cut(s) | 83 |
| SchI | GAGTC | 2 cut(s) | 68, 86 |
| SduI | GDGCHC | 1 cut(s) | 406 |
| SetI | ASST | 7 cut(s) | 111, 121, 160, 169, 264, 406, 426 |
| SfaNI | GCATC | 1 cut(s) | 309 |
| SinI | GGWCC | 1 cut(s) | 83 |
| SmiI | ATTTAAAT | 1 cut(s) | 385 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 318 |
| SmlI | CTYRAG | 1 cut(s) | 405 |
| SmoI | CTYRAG | 1 cut(s) | 405 |
| Sse9I | AATT | 2 cut(s) | 138, 380 |
| SsiI | CCGC | 2 cut(s) | 78, 100 |
| SstI | GAGCTC | 1 cut(s) | 406 |
| SwaI | ATTTAAAT | 1 cut(s) | 385 |
| TaaI | ACNGT | 1 cut(s) | 202 |
| TaiI | ACGT | 3 cut(s) | 111, 160, 264 |
| TaqI | TCGA | 1 cut(s) | 24 |
| TasI | AATT | 2 cut(s) | 138, 380 |
| Tru1I | TTAA | 2 cut(s) | 105, 384 |
| Tru9I | TTAA | 2 cut(s) | 105, 384 |
| TscAI | CASTG | 1 cut(s) | 205 |
| TspDTI | ATGAA | 2 cut(s) | 31, 381 |
| TspRI | CASTG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 1 cut(s) | 83 |
| XapI | RAATTY | 1 cut(s) | 380 |
| ZraI | GACGTC | 1 cut(s) | 262 |
| Zsp2I | ATGCAT | 1 cut(s) | 325 |