Rorug06G0052300

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
7347896 .. 7352014
4119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0052300.1

Sequence Viewer

Length: 1254 bp
ATGGAGAGTCTCGAGAGAACAAAAGGGGAGATTACTGAAGAAACCTCAACTTCTCAGGGCGGCGCATTCTCTGGCGCTGTCACCGGTGTGCCAGGAGAGGATAGTGTGAAGAAAAACCCTGTGTACCATATGATTCAGTGCTTGGAAAGCCTAAAGCAGTTGAGTTCTGGTGAAAGCAGTCAAAAAGGCGACAAGGCTACTCAAGATCTTGTTTTGGGCTTGAAGAACATGGCTTCATATCTTCATGATTTGCAAAGTAGAGAGGAATTTAGAGCAAGAGATGGACCAAATGTTGTGGTGAGTATTCTAAATGATGGATTTGGGAACAGAGACATAGTGTTCAGTGGCTTTGCTGTCGTTGCTGCTGCTTCAACGGGTAACAAGGATACAAAAGAGTCTTTCATGAACTTGAAGATTGAAGAGCTTATTTTGCAAGCACTTACAAAAAGTAGAGACACAAGAGGTGAAAGCAGCATTGACTTGAATGTCAGTGTATATGATGCCATACATATTCTCTTAACAGCTGACGATACTCGTTTTCCGCCTTCCCAAATATGTGGTAATGCGCGGAAATTCGCCCAAACTGGAATTGTAGAAGTTCTGCTTCAAGTTATGAACACAGCAGCCCTATCTGAGCGTTTTTTAGCAGCCATCGCTTTGGACGCTATTGCTCTCAACGATAAAATATGTGCAATCATATTTCAAAAGGGTGGTACTGCTAGAGTTCTCTCCTGTCTTCAAAGCATTCTCCCAGATACTGAATTCAGTACTGACCCAGACAAAACAGTAACAAAAGCTTGCTGTTCTTTGCTCTCCAAGTTGGCAGGAATGGACACCGATGACATTATTTCTGAGGAGAGTTTGGGTACGCTAATCGACCTTATTTCTGAACAGAGTTTGGGTACGCTAGTCTACCTCAGCGGGACTCCATGTTATTATGACTCTTCAGTCCTGCAAGAGATGATGTCTCTTATTTCAATACTCTCCCTAAAATCCCCTGCCTGTGCATTTGAAGCCGGGGTTGGAAAACTTACAATCAAGGTCATGAAGGATTTCCCTGCTGCACAAATACTGCAATGGAGATGCTGTCTCATTATCCGGAATCTTGCTGTAAAAAACTCAGAAAACATAAAAATTATGCTCGAGAATGGTGTCGAAACATTGATAAGGCAGGCGAAGCAAACGCATGCAATCTGTAAGGATGCTGCGACAGACGCCCTAAGGCGTCTGGAACTTGATGATTACTACGTGTAA

Protein Analysis

417

Amino Acids

45.28

Weight (kDa)

4.95

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 485, 947
AccI GTMKAC 1 cut(s) 912
AccII CGCG 1 cut(s) 568
AccIII TCCGGA 1 cut(s) 1098
AciI CCGC 4 cut(s) 60, 542, 568, 921
AcsI RAATTY 3 cut(s) 266, 572, 761
AcuI CTGAAG 2 cut(s) 57, 930
AcyI GRCGYC 2 cut(s) 1215, 1225
AfaI GTAC 5 cut(s) 125, 715, 769, 868, 904
AflIII ACRYGT 1 cut(s) 1248
AgeI ACCGGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 1005, 1037
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 3 cut(s) 424, 524, 797
AluI AGCT 3 cut(s) 424, 524, 797
Alw26I GTCTC 5 cut(s) 14, 324, 447, 972, 1094
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 2 cut(s) 11, 1142
Aor13HI TCCGGA 1 cut(s) 1098
ApeKI GCWGC 7 cut(s) 362, 365, 471, 623, 647, 1061, 1205
ApoI RAATTY 3 cut(s) 266, 572, 761
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 1052
AspLEI GCGC 3 cut(s) 65, 77, 568
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 1018
AsuHPI GGTGA 4 cut(s) 73, 182, 310, 476
AvaI CYCGRG 2 cut(s) 11, 1142
AvaII GGWCC 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 1220
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BbsI GAAGAC 1 cut(s) 728
BbvCI CCTCAGC 1 cut(s) 917
BbvI GCAGC 7 cut(s) 349, 352, 483, 635, 659, 1048, 1192
BccI CCATC 3 cut(s) 275, 308, 659
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 379
BcnI CCSGG 1 cut(s) 1018
BcoDI GTCTC 5 cut(s) 14, 324, 447, 972, 1094
BfaI CTAG 2 cut(s) 720, 908
BfoI RGCGCY 1 cut(s) 78
BfuI GTATCC 1 cut(s) 379
BglII AGATCT 1 cut(s) 205
BisI GCNGC 8 cut(s) 61, 363, 366, 472, 624, 648, 1062, 1206
BlsI GCNGC 8 cut(s) 62, 364, 367, 473, 625, 649, 1063, 1207
BmcAI AGTACT 1 cut(s) 769
Bme1390I CCNGG 2 cut(s) 93, 1018
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 2 cut(s) 11, 1142
BmgT120I GGNCC 1 cut(s) 284
BmrFI CCNGG 2 cut(s) 93, 1018
BmsI GCATC 3 cut(s) 490, 1073, 1192
BpiI GAAGAC 1 cut(s) 728
Bpu10I CCTNAGC 1 cut(s) 917
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 1018
BsaAI YACGTR 1 cut(s) 1249
BsaHI GRCGYC 2 cut(s) 1215, 1225
BsaJI CCNNGG 1 cut(s) 1017
BsaWI WCCGGW 2 cut(s) 83, 1098
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 589
Bse21I CCTNAGG 1 cut(s) 1220
Bse3DI GCAATG 1 cut(s) 1082
BseAI TCCGGA 1 cut(s) 1098
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 1017
BseGI GGATG 1 cut(s) 1207
BseMI GCAATG 1 cut(s) 1082
BseMII CTCAG 5 cut(s) 68, 624, 843, 931, 1134
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 1 cut(s) 869
BseXI GCAGC 7 cut(s) 349, 352, 483, 635, 659, 1048, 1192
BsgI GTGCAG 1 cut(s) 1047
Bsh1236I CGCG 1 cut(s) 568
BshTI ACCGGT 1 cut(s) 83
BsiHKCI CYCGRG 2 cut(s) 11, 1142
BsiSI CCGG 3 cut(s) 84, 1017, 1099
BslFI GGGAC 1 cut(s) 937
BsmAI GTCTC 5 cut(s) 14, 324, 447, 972, 1094
BsmFI GGGAC 1 cut(s) 937
BsmI GAATGC 2 cut(s) 65, 744
BsoBI CYCGRG 2 cut(s) 11, 1142
Bsp13I TCCGGA 1 cut(s) 1098
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 4 cut(s) 60, 542, 568, 921
BspCNI CTCAG 5 cut(s) 67, 625, 844, 930, 1133
BspEI TCCGGA 1 cut(s) 1098
BspFNI CGCG 1 cut(s) 568
BspHI TCATGA 3 cut(s) 244, 402, 1044
BspQI GCTCTTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 1082
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 1017
BssMI GATC 1 cut(s) 205
BssNI GRCGYC 2 cut(s) 1215, 1225
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 787
Bst6I CTCTTC 2 cut(s) 414, 949
BstACI GRCGYC 2 cut(s) 1215, 1225
BstBAI YACGTR 1 cut(s) 1249
BstC8I GCNNGC 4 cut(s) 435, 799, 1173, 1188
BstDEI CTNAG 6 cut(s) 54, 633, 852, 917, 1120, 1220
BstF5I GGATG 1 cut(s) 1207
BstFNI CGCG 1 cut(s) 568
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 3 cut(s) 65, 77, 568
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 5 cut(s) 14, 324, 447, 972, 1094
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 8 cut(s) 147, 359, 430, 653, 662, 1013, 1177, 1214
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 1190
BstSCI CCNGG 2 cut(s) 91, 1016
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 7 cut(s) 349, 352, 483, 635, 659, 1048, 1192
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 2 cut(s) 557, 658
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 1220
BsuI GTATCC 1 cut(s) 379
BtgZI GCGATG 1 cut(s) 637
BtsCI GGATG 1 cut(s) 1207
BtsIMutI CAGTG 3 cut(s) 143, 349, 496
Cac8I GCNNGC 4 cut(s) 435, 799, 1173, 1188
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 3 cut(s) 244, 402, 1044
CfoI GCGC 3 cut(s) 65, 77, 568
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 3 cut(s) 671, 1214, 1223
Csp6I GTAC 5 cut(s) 124, 714, 768, 867, 903
CspAI ACCGGT 1 cut(s) 83
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 6 cut(s) 229, 245, 403, 930, 1045, 1187
CviQI GTAC 5 cut(s) 124, 714, 768, 867, 903
DdeI CTNAG 6 cut(s) 54, 633, 852, 917, 1120, 1220
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DrdI GACNNNNNNGTC 2 cut(s) 485, 947
DseDI GACNNNNNNGTC 2 cut(s) 485, 947
Eam1104I CTCTTC 2 cut(s) 414, 949
EarI CTCTTC 2 cut(s) 414, 949
EciI GGCGGA 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 57, 930
Eco81I CCTNAGG 1 cut(s) 1220
Eco88I CYCGRG 2 cut(s) 11, 1142
EcoRI GAATTC 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 6 cut(s) 232, 248, 406, 933, 1048, 1190
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 937
FatI CATG 6 cut(s) 228, 244, 402, 929, 1044, 1186
FauI CCCGC 1 cut(s) 914
FauNDI CATATG 1 cut(s) 129
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 8 cut(s) 61, 363, 366, 472, 624, 648, 1062, 1206
FokI GGATG 1 cut(s) 1214
Fsp4HI GCNGC 8 cut(s) 61, 363, 366, 472, 624, 648, 1062, 1206
FspBI CTAG 2 cut(s) 720, 908
GlaI GCGC 3 cut(s) 64, 76, 567
GluI GCNGC 8 cut(s) 61, 363, 366, 472, 624, 648, 1062, 1206
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 3 cut(s) 84, 1017, 1099
HgaI GACGC 3 cut(s) 671, 1214, 1223
HhaI GCGC 3 cut(s) 65, 77, 568
Hin1I GRCGYC 2 cut(s) 1215, 1225
Hin1II CATG 6 cut(s) 232, 248, 406, 933, 1048, 1190
Hin6I GCGC 3 cut(s) 63, 75, 566
HinP1I GCGC 3 cut(s) 63, 75, 566
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 6 cut(s) 7, 133, 395, 925, 941, 1102
HpaII CCGG 3 cut(s) 84, 1017, 1099
HphI GGTGA 4 cut(s) 73, 182, 310, 476
Hpy166II GTNNAC 2 cut(s) 124, 913
Hpy188I TCNGA 4 cut(s) 634, 853, 889, 1123
Hpy188III TCNNGA 9 cut(s) 11, 13, 203, 245, 403, 1045, 1099, 1144, 1229
Hpy8I GTNNAC 2 cut(s) 124, 913
HpyAV CCTTC 2 cut(s) 555, 1042
HpyCH4III ACNGT 1 cut(s) 787
HpyCH4IV ACGT 1 cut(s) 1248
HpyCH4V TGCA 8 cut(s) 253, 433, 692, 955, 1007, 1064, 1075, 1190
HpyF10VI GCNNNNNNNGC 8 cut(s) 147, 359, 430, 653, 662, 1013, 1177, 1214
HpyF3I CTNAG 6 cut(s) 54, 633, 852, 917, 1120, 1220
HpySE526I ACGT 1 cut(s) 1248
Hsp92I GRCGYC 2 cut(s) 1215, 1225
Hsp92II CATG 6 cut(s) 232, 248, 406, 933, 1048, 1190
HspAI GCGC 3 cut(s) 63, 75, 566
Kpn2I TCCGGA 1 cut(s) 1098
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 414
Lsp1109I GCAGC 7 cut(s) 349, 352, 483, 635, 659, 1048, 1192
LweI GCATC 3 cut(s) 490, 1073, 1192
MaeI CTAG 2 cut(s) 720, 908
MaeII ACGT 1 cut(s) 1248
MaeIII GTNAC 3 cut(s) 79, 377, 787
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 8 cut(s) 50, 121, 233, 235, 424, 431, 728, 936
MflI RGATCY 1 cut(s) 205
MluCI AATT 5 cut(s) 266, 572, 588, 761, 1134
MlyI GAGTC 4 cut(s) 16, 404, 919, 935
MmeI TCCRAC 1 cut(s) 1003
MnlI CCTC 6 cut(s) 55, 91, 256, 455, 847, 926
MroI TCCGGA 1 cut(s) 1098
MroXI GAANNNNTTC 1 cut(s) 1052
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 2 cut(s) 524, 921
MspI CCGG 3 cut(s) 84, 1017, 1099
MspR9I CCNGG 2 cut(s) 93, 1018
Mva1269I GAATGC 2 cut(s) 65, 744
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 8 cut(s) 147, 359, 430, 653, 662, 1013, 1177, 1214
NciI CCSGG 1 cut(s) 1018
NdeI CATATG 1 cut(s) 129
NdeII GATC 1 cut(s) 205
NlaIII CATG 6 cut(s) 232, 248, 406, 933, 1048, 1190
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 1190
OliI CACNNNNGTG 1 cut(s) 86
PaeI GCATGC 1 cut(s) 1190
PaeR7I CTCGAG 2 cut(s) 11, 1142
PagI TCATGA 3 cut(s) 244, 402, 1044
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 2 cut(s) 65, 744
PdmI GAANNNNTTC 1 cut(s) 1052
PfeI GAWTC 2 cut(s) 133, 1102
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 8 cut(s) 62, 364, 367, 473, 625, 649, 1063, 1207
PleI GAGTC 4 cut(s) 15, 403, 919, 935
PpsI GAGTC 4 cut(s) 15, 403, 919, 935
Ppu21I YACGTR 1 cut(s) 1249
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspPI GGNCC 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 5 cut(s) 125, 715, 769, 868, 904
RsaNI GTAC 5 cut(s) 124, 714, 768, 867, 903
RseI CAYNNNNRTG 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 8 cut(s) 61, 363, 366, 472, 624, 648, 1062, 1206
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 769
SchI GAGTC 4 cut(s) 16, 404, 919, 935
ScrFI CCNGG 2 cut(s) 93, 1018
SetI ASST 9 cut(s) 47, 426, 466, 526, 799, 882, 918, 1044, 1251
SfaNI GCATC 3 cut(s) 490, 1073, 1192
Sfr274I CTCGAG 2 cut(s) 11, 1142
SgrAI CRCCGGYG 1 cut(s) 83
SinI GGWCC 1 cut(s) 284
SlaI CTCGAG 2 cut(s) 11, 1142
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 11, 201, 1142
SmoI CTYRAG 3 cut(s) 11, 201, 1142
SphI GCATGC 1 cut(s) 1190
Sse9I AATT 5 cut(s) 266, 572, 588, 761, 1134
SsiI CCGC 4 cut(s) 60, 542, 568, 921
SspMI CTAG 2 cut(s) 720, 908
StyD4I CCNGG 2 cut(s) 91, 1016
TaaI ACNGT 1 cut(s) 787
TaiI ACGT 1 cut(s) 1251
TaqI TCGA 4 cut(s) 12, 876, 1143, 1155
TasI AATT 5 cut(s) 266, 572, 588, 761, 1134
TatI WGTACW 1 cut(s) 767
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 133, 1102
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 3 cut(s) 143, 349, 496
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 7 cut(s) 362, 365, 471, 623, 647, 1061, 1205
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 6 cut(s) 225, 233, 391, 419, 629, 1061
TspRI CASTG 3 cut(s) 143, 349, 496
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 3 cut(s) 266, 572, 761
XceI RCATGY 1 cut(s) 1190
XhoI CTCGAG 2 cut(s) 11, 1142
XmiI GTMKAC 1 cut(s) 912
XmnI GAANNNNTTC 1 cut(s) 1052
XspI CTAG 2 cut(s) 720, 908
ZrmI AGTACT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.