Rh6DG122300

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001691
Physical Location & Seq
Forward (+)
17170510 .. 17178841
8332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG122300.1

Sequence Viewer

Length: 237 bp
ATGTATCACAATGCAGGCATTGGTACTCTTTTGGAAAACTGTAATGATCTCAAAACATGTCAAGACCAGGGACGTAATATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGACATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGCAATCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

78

Amino Acids

8.57

Weight (kDa)

5.5

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 34 - 75 1.9e-09 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 117
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 66
AoxI GGCC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 85
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 68
BmtI GCTAGC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 133, 135
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 142
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 84, 211
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 84, 211
BsnI GGCC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 4 cut(s) 16, 180, 220, 224
BstF5I GGATG 2 cut(s) 133, 135
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 60, 113
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 207
BsuRI GGCC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 133, 135
Cac8I GCNNGC 4 cut(s) 16, 180, 220, 224
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 24
CviAII CATG 3 cut(s) 57, 110, 154
CviJI RGCY 3 cut(s) 142, 178, 222
CviKI_1 RGCY 3 cut(s) 142, 178, 222
CviQI GTAC 1 cut(s) 24
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 3 cut(s) 60, 113, 157
FaiI YATR 4 cut(s) 58, 111, 123, 155
FaqI GGGAC 2 cut(s) 84, 211
FatI CATG 3 cut(s) 56, 109, 153
FokI GGATG 2 cut(s) 122, 140
FspBI CTAG 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 139
Hin1II CATG 3 cut(s) 60, 113, 157
HpaII CCGG 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 4 cut(s) 14, 149, 182, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 60, 113, 157
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 6 cut(s) 53, 80, 81, 152, 192, 195
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 73
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MluCI AATT 2 cut(s) 117, 170
MnlI CCTC 2 cut(s) 94, 99
MseI TTAA 2 cut(s) 186, 235
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 1 cut(s) 46
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 3 cut(s) 60, 113, 157
NlaIV GGNNCC 1 cut(s) 87
NspI RCATGY 2 cut(s) 60, 113
PciI ACATGT 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 95
PscI ACATGT 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 186, 235
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 68
SetI ASST 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 85
SmiI ATTTAAAT 1 cut(s) 187
Sse9I AATT 2 cut(s) 117, 170
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 66
SwaI ATTTAAAT 1 cut(s) 187
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 76
TasI AATT 2 cut(s) 117, 170
Tru1I TTAA 2 cut(s) 186, 235
Tru9I TTAA 2 cut(s) 186, 235
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 117
XceI RCATGY 2 cut(s) 60, 113
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.