Rh6BG138500

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001691
Physical Location & Seq
Forward (+)
22115860 .. 22124135
8276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG138500.1

Sequence Viewer

Length: 210 bp
ATGTCAAGACCAGAAGACAATGAACTGGGAATCAATATTGAAGTTCCAAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGACATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGCAATCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

4.93

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 22 - 66 1.2e-09 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 41, 148
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 58
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 21
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 35
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 30, 73
BseGI GGATG 2 cut(s) 106, 108
BseLI CCNNNNNNNGG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 30, 73
BseRI GAGGAG 1 cut(s) 89
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 115
BspANI GGCC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 30, 73
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 153, 193, 197
BstF5I GGATG 2 cut(s) 106, 108
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 106, 108
Cac8I GCNNGC 3 cut(s) 153, 193, 197
Cfr13I GGNCC 1 cut(s) 58
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 2 cut(s) 83, 127
CviJI RGCY 3 cut(s) 115, 151, 195
CviKI_1 RGCY 3 cut(s) 115, 151, 195
DraI TTTAAA 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 58
FaeI CATG 2 cut(s) 86, 130
FaiI YATR 3 cut(s) 84, 96, 128
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 82, 126
FokI GGATG 2 cut(s) 95, 113
FspBI CTAG 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 112
Hin1II CATG 2 cut(s) 86, 130
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 122, 155, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Hsp92II CATG 2 cut(s) 86, 130
LpnPI CCDG 6 cut(s) 11, 24, 54, 125, 165, 168
MaeI CTAG 1 cut(s) 192
MboII GAAGA 1 cut(s) 26
MluCI AATT 2 cut(s) 90, 143
MnlI CCTC 2 cut(s) 67, 72
MseI TTAA 2 cut(s) 159, 208
MspI CCGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 188
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 86, 130
NlaIV GGNNCC 1 cut(s) 60
NspI RCATGY 1 cut(s) 86
PfeI GAWTC 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 184
SaqAI TTAA 2 cut(s) 159, 208
Sau96I GGNCC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 58
SmiI ATTTAAAT 1 cut(s) 160
Sse9I AATT 2 cut(s) 90, 143
SspI AATATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 192
SwaI ATTTAAAT 1 cut(s) 160
TasI AATT 2 cut(s) 90, 143
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 159, 208
Tru9I TTAA 2 cut(s) 159, 208
TspDTI ATGAA 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 90
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.