Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001691

Physical Location & Seq

Genomic Coordinates Forward (+)

40160920 .. 40161223

Gene Structure 304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGACTGATTTGGCGAAATTGAAGCTTGCATTTAAATCAGATGGGACAACAACTGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGTATGACATTGTAGTTTTATTAAACAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

50

Amino Acids

5.48

Weight (kDa)

9.74

Isoelectric Point (pI)

17.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001691)

Species	Orthologous Gene IDs
malus_domestica	MD06G1073900.v1.1 MD10G1168400.v1.1 MD15G1364500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0267301 RchiOBHm_Chr6g0277641 RchiOBHm_Chr6g0277651 RchiOBHm_Chr6g0286431
rosa_laevigata	RLG00000002514
rosa_roxburghii	Rroxscaffold_1G00000350 Rroxscaffold_1G00036750 Rroxscaffold_2G00129790 Rroxscaffold_7G00199270
rosa_rugosa	Rorug01G0193100 Rorug02G0197300 Rorug02G0197300 Rorug03G0273100 Rorug05G0480700 Rorug06G0006800 Rorug06G0006900 Rorug06G0052300 Rorug07G0068800 Rorug07G0271500
rosa_samantha	Rh1BG169200 Rh1DG199700 Rh2AG202000 Rh2AG202200 Rh2BG215100 Rh2BG543900 Rh2CG206200 Rh2DG209400 Rh3CG296600 Rh3CG296700 Rh3DG292600 Rh4BG187200 Rh5BG466100 Rh5CG224300 Rh5CG487700 Rh6AG179700 Rh6BG138500 Rh6CG136000 Rh6CG169900 Rh6CG227100 Rh6CG255600 Rh6CG296100 Rh6DG122300 Rh6DG162300 Rh6DG217500 Rh6DG287900 Rh7CG193900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	2 cut(s)	25, 83
AluI	AGCT	2 cut(s)	25, 83
BccI	CCATC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	107
BslFI	GGGAC	2 cut(s)	58, 108
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	58, 108
BspMAI	CTGCAG	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	59
CviJI	RGCY	2 cut(s)	25, 83
CviKI_1	RGCY	2 cut(s)	25, 83
CviQI	GTAC	1 cut(s)	59
DraI	TTTAAA	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
FaiI	YATR	1 cut(s)	123
FaqI	GGGAC	2 cut(s)	58, 108
FspEI	CC	8 cut(s)	27, 28, 77, 77, 78, 93, 103, 114
HindIII	AAGCTT	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	40, 90
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	29, 56
LpnPI	CCDG	2 cut(s)	77, 103
MboII	GAAGA	1 cut(s)	82
MfeI	CAATTG	1 cut(s)	145
MluCI	AATT	2 cut(s)	17, 145
MseI	TTAA	2 cut(s)	33, 140
MunI	CAATTG	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	33, 140
ScaI	AGTACT	1 cut(s)	60
SetI	ASST	3 cut(s)	27, 85, 122
SfcI	CTRYAG	1 cut(s)	54
SgeI	CNNG	3 cut(s)	38, 76, 130
SmiI	ATTTAAAT	1 cut(s)	34
Sse9I	AATT	2 cut(s)	17, 145
SwaI	ATTTAAAT	1 cut(s)	34
TasI	AATT	2 cut(s)	17, 145
TatI	WGTACW	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	33, 140
Tru9I	TTAA	2 cut(s)	33, 140
TspDTI	ATGAA	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.