Rh6DG162300

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001691
Physical Location & Seq
Forward (+)
24381410 .. 24392878
11469 bp
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UTR
Exon/CDS
Intron
Rh6DG162300.1

Sequence Viewer

Length: 363 bp
ATGTCTGGTGAGTGCGCTGGGCAAAGGCATAACTGCTACGTCGTTCTTAATCGTGTGGACTTTCTGTCACCTGCATCAAAATTGGTATTGGTACTCTTTTGGCAAACTGTAATGATCTCAAAACAAGTCAAGACCGAAAACATGTATCACAATGCAGGCATTGGTACTCTTTTGGAAAACTGTAATGATCTCAAAACAAGTCAAGACCAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCAAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGTAGGAAATGCTAGCCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

120

Amino Acids

13.34

Weight (kDa)

6.89

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 76 - 119 5e-08 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccB7I CCANNNNNTGG 2 cut(s) 214, 227
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 2 cut(s) 93, 166
AfiI CCNNNNNNNGG 2 cut(s) 214, 227
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 307
AhdI GACNNNNNGTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 20, 60
AsuNHI GCTAGC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 217
BccI CCATC 2 cut(s) 257, 320
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 217
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 2 cut(s) 83, 276
BmtI GCTAGC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 227
Bse1I ACTGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 265, 267
BseLI CCNNNNNNNGG 2 cut(s) 214, 227
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 214, 227
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 114, 187
BspANI GGCC 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 232
BssMI GATC 2 cut(s) 114, 187
Bst4CI ACNGT 3 cut(s) 109, 182, 340
BstC8I GCNNGC 4 cut(s) 157, 312, 352, 356
BstF5I GGATG 2 cut(s) 265, 267
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 117, 190
BstMBI GATC 2 cut(s) 114, 187
BstNSI RCATGY 2 cut(s) 145, 245
BstSFI CTRYAG 1 cut(s) 339
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 265, 267
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 4 cut(s) 157, 312, 352, 356
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 92, 165
CviAII CATG 3 cut(s) 142, 242, 286
CviJI RGCY 3 cut(s) 274, 310, 354
CviKI_1 RGCY 3 cut(s) 274, 310, 354
CviQI GTAC 2 cut(s) 92, 165
DpnI GATC 2 cut(s) 116, 189
DpnII GATC 2 cut(s) 114, 187
DraI TTTAAA 1 cut(s) 319
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 217
FaeI CATG 3 cut(s) 145, 245, 289
FaiI YATR 5 cut(s) 30, 143, 243, 255, 287
FaqI GGGAC 1 cut(s) 343
FatI CATG 3 cut(s) 141, 241, 285
FokI GGATG 2 cut(s) 254, 272
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 16
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 145, 245, 289
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HpaII CCGG 1 cut(s) 271
HphI GGTGA 2 cut(s) 20, 60
Hpy166II GTNNAC 2 cut(s) 58, 217
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 130, 203
Hpy8I GTNNAC 2 cut(s) 58, 217
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 3 cut(s) 109, 182, 340
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 74, 155, 281, 314
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 3 cut(s) 145, 245, 289
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 114, 187
LpnPI CCDG 7 cut(s) 3, 84, 141, 213, 221, 284, 324
LweI GCATC 2 cut(s) 83, 276
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 66
MalI GATC 2 cut(s) 116, 189
MboI GATC 2 cut(s) 114, 187
MluCI AATT 3 cut(s) 80, 249, 302
MnlI CCTC 2 cut(s) 226, 231
MseI TTAA 2 cut(s) 48, 318
MspI CCGG 1 cut(s) 271
NdeII GATC 2 cut(s) 114, 187
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 3 cut(s) 145, 245, 289
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 66
NspI RCATGY 2 cut(s) 145, 245
PaqCI CACCTGC 1 cut(s) 79
PciI ACATGT 1 cut(s) 141
PflMI CCANNNNNTGG 2 cut(s) 214, 227
PscI ACATGT 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 2 cut(s) 93, 166
RsaNI GTAC 2 cut(s) 92, 165
SaqAI TTAA 2 cut(s) 48, 318
Sau3AI GATC 2 cut(s) 114, 187
Sau96I GGNCC 1 cut(s) 217
SetI ASST 2 cut(s) 42, 73
SfaNI GCATC 2 cut(s) 83, 276
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 217
SmiI ATTTAAAT 1 cut(s) 319
Sse9I AATT 3 cut(s) 80, 249, 302
SspMI CTAG 1 cut(s) 351
SwaI ATTTAAAT 1 cut(s) 319
TaaI ACNGT 3 cut(s) 109, 182, 340
TaiI ACGT 1 cut(s) 42
TaqII GACCGA 1 cut(s) 149
TasI AATT 3 cut(s) 80, 249, 302
Tru1I TTAA 2 cut(s) 48, 318
Tru9I TTAA 2 cut(s) 48, 318
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
Van91I CCANNNNNTGG 2 cut(s) 214, 227
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 249
XceI RCATGY 2 cut(s) 145, 245
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.