Rh3DG292600

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001691
Physical Location & Seq
Reverse (-)
30317457 .. 30331683
14227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG292600.1

Sequence Viewer

Length: 537 bp
ATGGGGATCGTGGGGAGGCCGCCGGGAAAGATGGGGATCGGGGTGCAGCGCTGGGCGCGCAAGACTAGAGGCTTGGAGGCGCTGCAGGTGACAACCCAGATGAGTTCTGGGTTCTCCGGTGGGAACGGGGGTCACCGACGGCAGGAACTGATGCGGTGCTGCAATCGGGCCTACCGAACTGCCATTTACAAAGCAAAGCGAGGCGGTTTTAAGGATACTTTAGCTGATGATTTGCTGGCACCTATTTTGAAGGCAGTTATAGAGAGAAAAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGATATGGAGGATGAAGTTAGAGAATTGGGGGAAAGAAGAGGAACTTCAAGTTTGGATGCCCAAGGTCTTTCAACGAAATCCAAATTTGGATATTTTAGTGATGAATTATGGGAGATGACACTAAGTATACATGGAATTCATATAATTGTCTTAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

178

Amino Acids

19.49

Weight (kDa)

9.43

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 57 - 127 2.5e-10 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 505
AccII CGCG 1 cut(s) 58
AciI CCGC 3 cut(s) 20, 154, 204
AclWI GGATC 2 cut(s) 14, 44
AcsI RAATTY 3 cut(s) 271, 461, 513
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 4 cut(s) 250, 277, 426, 450
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AlwI GGATC 2 cut(s) 14, 44
AlwNI CAGNNNCTG 1 cut(s) 148
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 2 cut(s) 17, 168
ApeKI GCWGC 4 cut(s) 46, 82, 159, 356
ApoI RAATTY 3 cut(s) 271, 461, 513
AspLEI GCGC 4 cut(s) 51, 58, 60, 82
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 100, 125
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 4 cut(s) 58, 69, 146, 368
BccI CCATC 2 cut(s) 25, 346
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 24
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 83
BfoI RGCGCY 2 cut(s) 52, 83
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 5 cut(s) 20, 47, 83, 160, 357
BlsI GCNGC 5 cut(s) 21, 48, 84, 161, 358
Bme1390I CCNGG 2 cut(s) 24, 324
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 24, 324
BmsI GCATC 2 cut(s) 141, 424
BpuMI CCSGG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 3 cut(s) 357, 394, 439
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 142
BsePI GCGCGC 1 cut(s) 56
BseXI GCAGC 4 cut(s) 58, 69, 146, 368
BseYI CCCAGC 1 cut(s) 51
BsgI GTGCAG 2 cut(s) 65, 367
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 19, 170
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 23, 117
BslI CCNNNNNNNGG 1 cut(s) 142
BsnI GGCC 2 cut(s) 19, 170
Bsp143I GATC 2 cut(s) 6, 36
BspACI CCGC 3 cut(s) 20, 154, 204
BspANI GGCC 2 cut(s) 19, 170
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 2 cut(s) 14, 44
BspT107I GGYRCC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 439
BssHII GCGCGC 1 cut(s) 56
BssMI GATC 2 cut(s) 6, 36
BssNAI GTATAC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 439
Bst1107I GTATAC 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 58, 237
BstDEI CTNAG 3 cut(s) 332, 500, 529
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 3 cut(s) 357, 394, 439
BstFNI CGCG 1 cut(s) 58
BstH2I RGCGCY 2 cut(s) 52, 83
BstHHI GCGC 4 cut(s) 51, 58, 60, 82
BstKTI GATC 2 cut(s) 9, 39
BstMBI GATC 2 cut(s) 6, 36
BstMWI GCNNNNNNNGC 2 cut(s) 55, 57
BstNI CCWGG 1 cut(s) 324
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 22, 322
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 4 cut(s) 58, 69, 146, 368
BstZ17I GTATAC 1 cut(s) 506
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 19, 170
BtsCI GGATG 3 cut(s) 357, 394, 439
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 58, 237
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 4 cut(s) 51, 58, 60, 82
Cfr13I GGNCC 1 cut(s) 168
CviAII CATG 1 cut(s) 509
CviJI RGCY 6 cut(s) 19, 72, 170, 224, 327, 534
CviKI_1 RGCY 6 cut(s) 19, 72, 170, 224, 327, 534
DdeI CTNAG 3 cut(s) 332, 500, 529
DpnI GATC 2 cut(s) 8, 38
DpnII GATC 2 cut(s) 6, 36
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 439
Eco47III AGCGCT 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 1 cut(s) 512
FaiI YATR 9 cut(s) 260, 299, 366, 383, 487, 506, 510, 519, 521
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FatI CATG 1 cut(s) 508
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 5 cut(s) 20, 47, 83, 160, 357
FokI GGATG 3 cut(s) 364, 401, 446
Fsp4HI GCNGC 5 cut(s) 20, 47, 83, 160, 357
FspBI CTAG 1 cut(s) 66
GlaI GCGC 4 cut(s) 50, 57, 59, 81
GluI GCNGC 5 cut(s) 20, 47, 83, 160, 357
GsaI CCCAGC 1 cut(s) 55
HaeII RGCGCY 2 cut(s) 52, 83
HaeIII GGCC 2 cut(s) 19, 170
HapII CCGG 2 cut(s) 23, 117
HhaI GCGC 4 cut(s) 51, 58, 60, 82
Hin1II CATG 1 cut(s) 512
Hin6I GCGC 4 cut(s) 49, 56, 58, 80
HinP1I GCGC 4 cut(s) 49, 56, 58, 80
HpaII CCGG 2 cut(s) 23, 117
HphI GGTGA 2 cut(s) 100, 125
Hpy166II GTNNAC 1 cut(s) 506
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 46, 85, 162, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 57
HpyF3I CTNAG 3 cut(s) 332, 500, 529
Hsp92II CATG 1 cut(s) 512
HspAI GCGC 4 cut(s) 49, 56, 58, 80
Kzo9I GATC 2 cut(s) 6, 36
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 4 cut(s) 58, 69, 146, 368
LweI GCATC 2 cut(s) 141, 424
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 88, 131
MalI GATC 2 cut(s) 8, 38
MboI GATC 2 cut(s) 6, 36
MboII GAAGA 1 cut(s) 426
MfeI CAATTG 1 cut(s) 339
MluCI AATT 7 cut(s) 271, 339, 401, 461, 482, 513, 522
MnlI CCTC 6 cut(s) 9, 62, 70, 194, 379, 410
MseI TTAA 1 cut(s) 210
MspI CCGG 2 cut(s) 23, 117
MspR9I CCNGG 2 cut(s) 24, 324
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 55, 57
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 6, 36
NlaIII CATG 1 cut(s) 512
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 88, 131
PaqCI CACCTGC 1 cut(s) 76
PauI GCGCGC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PkrI GCNGC 5 cut(s) 21, 48, 84, 161, 358
Psp6I CCWGG 1 cut(s) 322
PspEI GGTNACC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 168
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 148
PteI GCGCGC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 5 cut(s) 20, 47, 83, 160, 357
Sau3AI GATC 2 cut(s) 6, 36
Sau96I GGNCC 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 24, 324
SetI ASST 4 cut(s) 90, 226, 244, 445
SfaNI GCATC 2 cut(s) 141, 424
SfcI CTRYAG 1 cut(s) 83
Sse9I AATT 7 cut(s) 271, 339, 401, 461, 482, 513, 522
SsiI CCGC 3 cut(s) 20, 154, 204
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 22, 322
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 313
TasI AATT 7 cut(s) 271, 339, 401, 461, 482, 513, 522
TauI GCSGC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 2 cut(s) 88, 131
TseI GCWGC 4 cut(s) 46, 82, 159, 356
Tsp45I GTSAC 2 cut(s) 88, 131
TspDTI ATGAA 3 cut(s) 405, 495, 506
XapI RAATTY 3 cut(s) 271, 461, 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 505
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.