MD06G1073900.v1.1

acetyl-CoA C-acyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001691
Physical Location & Seq
Forward (+)
18478720 .. 18481970
3251 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1073900.v1.1.491

Sequence Viewer

Length: 528 bp
ATGGAACAGATGGATAAAGCAATGAACAGACAGAGGGTTCTGCTGCAGCACTTGAGACCCAATTCTTCTGTTTCCTCTTCCAATTTTGAATCTGTTGCTCTCTCTGCTTCAATATGTGCAGCTGGAAATAGTGCTGCCTACCATAGAACAGCTGCTTTTGGAGACGATGTAGTGATTGTGGCAGTGTATCGGACTGCCATTTGCAAGGCAAAGCGAGGCGGTTTTAAGGACACTCTACCTGATGATTTACTGGCACCTGTTTTAAAGGAAGTAATAGAGAGAACAAATTTGAACCCAAGTGAGGTGGGGGATATAGTTGTTGGTACAGTTAGGGCACCTGGCTCACTTAGAGCCACTGAGTGCAGGATGGCAGCGTTTTACGCTAGCTTCCCCGGTAAGTTTTCAACCATATTTGAAGTTTGGAGGTCGGGTAAAGGAGGAGGGGGAGGGCGTCAGGTAGTCGACAGCTGGCACTCCACAGTTACGTCGAATCCTTATGAAAATGAATTCAGAACGAAATCGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

176

Amino Acids

19.02

Weight (kDa)

9.3

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 57 - 134 1e-11 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 253, 334
AccI GTMKAC 1 cut(s) 462
AccII CGCG 1 cut(s) 523
AciI CCGC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 286, 506
AcyI GRCGYC 1 cut(s) 451
AdeI CACNNNGTG 1 cut(s) 360
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 5 cut(s) 89, 111, 292, 405, 416
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 4 cut(s) 122, 152, 387, 468
AluI AGCT 4 cut(s) 122, 152, 387, 468
Alw26I GTCTC 2 cut(s) 49, 156
ApeKI GCWGC 6 cut(s) 43, 46, 119, 134, 152, 371
ApoI RAATTY 2 cut(s) 286, 506
AspLEI GCGC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 393
AsuNHI GCTAGC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 337
BanI GGYRCC 2 cut(s) 253, 334
BbvI GCAGC 6 cut(s) 30, 58, 121, 131, 139, 383
BccI CCATC 2 cut(s) 4, 361
BciT130I CCWGG 1 cut(s) 339
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 49, 156
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 44
BisI GCNGC 6 cut(s) 44, 47, 120, 135, 153, 372
BlsI GCNGC 6 cut(s) 45, 48, 121, 136, 154, 373
Bme1390I CCNGG 2 cut(s) 339, 393
BmiI GGNNCC 2 cut(s) 255, 336
BmrFI CCNGG 2 cut(s) 339, 393
BmtI GCTAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 451
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 391
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 415, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 6 cut(s) 30, 58, 121, 131, 139, 383
BsgI GTGCAG 2 cut(s) 138, 382
Bsh1236I CGCG 1 cut(s) 523
BshNI GGYRCC 2 cut(s) 253, 334
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 2 cut(s) 49, 156
BsmBI CGTCTC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 337
BspACI CCGC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 255, 336
BspMAI CTGCAG 1 cut(s) 48
BspOI GCTAGC 1 cut(s) 387
BspT107I GGYRCC 2 cut(s) 253, 334
BspTNI GGTCTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 328, 481
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 385, 470
BstDEI CTNAG 2 cut(s) 347, 357
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 525
BstMAI GTCTC 2 cut(s) 49, 156
BstMWI GCNNNNNNNGC 2 cut(s) 104, 380
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 337, 391
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 6 cut(s) 30, 58, 121, 131, 139, 383
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 354
Cac8I GCNNGC 2 cut(s) 385, 470
CfoI GCGC 1 cut(s) 525
CseI GACGC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviJI RGCY 6 cut(s) 122, 152, 342, 353, 387, 468
CviKI_1 RGCY 6 cut(s) 122, 152, 342, 353, 387, 468
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 347, 357
DraI TTTAAA 1 cut(s) 264
DraIII CACNNNGTG 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 156
FaiI YATR 5 cut(s) 115, 144, 314, 410, 498
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 6 cut(s) 44, 47, 120, 135, 153, 372
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 6 cut(s) 44, 47, 120, 135, 153, 372
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 524
GluI GCNGC 6 cut(s) 44, 47, 120, 135, 153, 372
HapII CCGG 1 cut(s) 393
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 451
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 2 cut(s) 89, 490
HpaII CCGG 1 cut(s) 393
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 2 cut(s) 192, 512
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 490
HpyCH4III ACNGT 2 cut(s) 328, 481
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 4 cut(s) 46, 119, 204, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 380
HpyF3I CTNAG 2 cut(s) 347, 357
HpySE526I ACGT 1 cut(s) 485
Hsp92I GRCGYC 1 cut(s) 451
HspAI GCGC 1 cut(s) 523
Lsp1109I GCAGC 6 cut(s) 30, 58, 121, 131, 139, 383
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 481
MboII GAAGA 2 cut(s) 57, 69
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 4 cut(s) 61, 82, 286, 506
MnlI CCTC 8 cut(s) 27, 85, 209, 295, 417, 431, 434, 440
MseI TTAA 2 cut(s) 225, 263
MspA1I CMGCKG 3 cut(s) 122, 152, 468
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 339, 393
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 2 cut(s) 104, 380
NciI CCSGG 1 cut(s) 393
NheI GCTAGC 1 cut(s) 383
NlaIV GGNNCC 2 cut(s) 255, 336
PfeI GAWTC 2 cut(s) 89, 490
PkrI GCNGC 6 cut(s) 45, 48, 121, 136, 154, 373
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 255, 336
PstI CTGCAG 1 cut(s) 48
PvuII CAGCTG 3 cut(s) 122, 152, 468
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 2 cut(s) 225, 263
SatI GCNGC 6 cut(s) 44, 47, 120, 135, 153, 372
ScrFI CCNGG 2 cut(s) 339, 393
SduI GDGCHC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 4 cut(s) 61, 82, 286, 506
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 337, 391
TaaI ACNGT 2 cut(s) 328, 481
TaiI ACGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 462, 488
TasI AATT 4 cut(s) 61, 82, 286, 506
TfiI GAWTC 2 cut(s) 89, 490
Tru1I TTAA 2 cut(s) 225, 263
Tru9I TTAA 2 cut(s) 225, 263
TscAI CASTG 2 cut(s) 189, 361
TseI GCWGC 6 cut(s) 43, 46, 119, 134, 152, 371
TspDTI ATGAA 3 cut(s) 38, 513, 519
TspRI CASTG 2 cut(s) 189, 361
XapI RAATTY 2 cut(s) 286, 506
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.