Rroxscaffold_1G00036750

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001691
Physical Location & Seq
Reverse (-)
53681938 .. 53688026
6089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036750.1

Sequence Viewer

Length: 312 bp
ATGTTAAACGGGGCCTACCGAACTGCCATTTACAAAGCAAAGCGAGGCGGTTTTAAGGATACTTTATCCGATGATTTCGGCACCTGTTTTGAAGGTAAGATAAACATACAGTTGAATTTTGACAGGAAAGAATGTCGAGTCTCGGGATTTGCAGTTATAGAGAGAATAAATTTGAACCCAAGTGAAGTAGGGGATATAATGGTTGGCACAGTTCTCACTCCCGGCTCACTTATAGCAATTGAGTGCAGGATGGCAGCATTTTATGTCGGTTTTCCTGCCACGGGGTTCGCGGATTTTTTCCGAATCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

8.53

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 48, 290
AcsI RAATTY 2 cut(s) 115, 169
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 92, 115, 175
Alw26I GTCTC 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 115, 169
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 142
BanI GGYRCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 244
BciVI GTATCC 1 cut(s) 52
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 145
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 13, 82
BmrFI CCNGG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 2 cut(s) 222, 307
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 142
BspACI CCGC 2 cut(s) 48, 290
BspANI GGCC 1 cut(s) 14
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 2 cut(s) 13, 82
BspT107I GGYRCC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 111, 211
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 266
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 12
CviJI RGCY 2 cut(s) 14, 225
CviKI_1 RGCY 2 cut(s) 14, 225
Eco88I CYCGRG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 12
FaiI YATR 5 cut(s) 107, 158, 197, 233, 264
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 222, 307
HinfI GANTC 2 cut(s) 138, 303
HpaII CCGG 2 cut(s) 222, 307
Hpy188I TCNGA 2 cut(s) 70, 302
Hpy188III TCNNGA 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 111, 211
HpyCH4V TGCA 2 cut(s) 152, 246
LpnPI CCDG 5 cut(s) 97, 109, 232, 235, 288
Lsp1109I GCAGC 1 cut(s) 266
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 115, 169, 237
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 1 cut(s) 38
MseI TTAA 2 cut(s) 5, 54
MspI CCGG 2 cut(s) 222, 307
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 237
MvnI CGCG 1 cut(s) 290
NciI CCSGG 1 cut(s) 222
NlaIV GGNNCC 2 cut(s) 13, 82
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 13, 82
PspPI GGNCC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 5, 54
SatI GCNGC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 222
SetI ASST 2 cut(s) 86, 97
Sse9I AATT 3 cut(s) 115, 169, 237
SsiI CCGC 2 cut(s) 48, 290
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 111, 211
TaqI TCGA 1 cut(s) 136
TasI AATT 3 cut(s) 115, 169, 237
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 5, 54
Tru9I TTAA 2 cut(s) 5, 54
TseI GCWGC 1 cut(s) 254
XapI RAATTY 2 cut(s) 115, 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.