Rh3CG296600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001691
Physical Location & Seq
Reverse (-)
30382416 .. 30384833
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG296600.1

Sequence Viewer

Length: 309 bp
ATGTGCGTGTGTGTGTACGCGCGCCATGTGCAAAAGAGACAGAGACTGAGAGGGAGAAAGCGAGCAATGCATTGCATATATTTTGAATCTCTGAACAGTCATCCCATGTTTACATGTCGGCTAGGTCTGCCAGGGACTAAGGATGTTGGCCTGAGAGTAGTGGTAAGGAATGAACAGGGCGATTTTGTACTTTCCAGCCATATTCTATCTTTATGTGAAAGGAGCCTCCTCACCGTTGTAAGTGGAAGCAATATCTCTAAGGGAGGCGCTAGGCAATATAGCGCAGCAAGCATGATTGGTGCACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.37

Weight (kDa)

10.38

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 22
AfaI GTAC 2 cut(s) 17, 189
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 31, 37
Alw44I GTGCAC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 4 cut(s) 22, 24, 269, 284
AsuHPI GGTGA 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 31, 37
BfaI CTAG 2 cut(s) 122, 270
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 131
Bse3DI GCAATG 2 cut(s) 70, 72
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 100, 148
BseMI GCAATG 2 cut(s) 70, 72
BseMII CTCAG 2 cut(s) 38, 143
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 1 cut(s) 296
Bsh1236I CGCG 2 cut(s) 20, 22
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 31, 37
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 304
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 39, 144
BspFNI CGCG 2 cut(s) 20, 22
BspLI GGNNCC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 70, 72
BssECI CCNNGG 1 cut(s) 131
BssHII GCGCGC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 98, 235, 306
BstC8I GCNNGC 3 cut(s) 22, 63, 289
BstDEI CTNAG 4 cut(s) 47, 138, 152, 258
BstF5I GGATG 2 cut(s) 100, 148
BstFNI CGCG 2 cut(s) 20, 22
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 4 cut(s) 22, 24, 269, 284
BstMAI GTCTC 2 cut(s) 31, 37
BstMWI GCNNNNNNNGC 4 cut(s) 28, 67, 127, 288
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 2 cut(s) 20, 22
BstV1I GCAGC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 100, 148
Cac8I GCNNGC 3 cut(s) 22, 63, 289
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 4 cut(s) 22, 24, 269, 284
Csp6I GTAC 2 cut(s) 16, 188
CviAII CATG 4 cut(s) 26, 106, 114, 292
CviJI RGCY 4 cut(s) 121, 150, 198, 225
CviKI_1 RGCY 4 cut(s) 121, 150, 198, 225
CviQI GTAC 2 cut(s) 16, 188
DdeI CTNAG 4 cut(s) 47, 138, 152, 258
EcoRII CCWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 4 cut(s) 29, 109, 117, 295
FaiI YATR 9 cut(s) 27, 77, 79, 107, 115, 201, 214, 279, 293
FaqI GGGAC 1 cut(s) 148
FatI CATG 4 cut(s) 25, 105, 113, 291
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 2 cut(s) 87, 155
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 122, 270
GlaI GCGC 4 cut(s) 21, 23, 268, 283
GluI GCNGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 150
HhaI GCGC 4 cut(s) 22, 24, 269, 284
Hin1II CATG 4 cut(s) 29, 109, 117, 295
Hin6I GCGC 4 cut(s) 20, 22, 267, 282
HinP1I GCGC 4 cut(s) 20, 22, 267, 282
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 3 cut(s) 16, 111, 302
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 3 cut(s) 16, 111, 302
HpyCH4III ACNGT 3 cut(s) 98, 235, 306
HpyCH4V TGCA 4 cut(s) 31, 70, 75, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 67, 127, 288
HpyF3I CTNAG 4 cut(s) 47, 138, 152, 258
Hsp92II CATG 4 cut(s) 29, 109, 117, 295
HspAI GCGC 4 cut(s) 20, 22, 267, 282
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 117, 144, 161, 164, 208
Lsp1109I GCAGC 1 cut(s) 296
MaeI CTAG 2 cut(s) 122, 270
MhlI GDGCHC 1 cut(s) 304
MnlI CCTC 4 cut(s) 44, 236, 239, 257
Mph1103I ATGCAT 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 20, 22
MwoI GCNNNNNNNGC 4 cut(s) 28, 67, 127, 288
NlaIII CATG 4 cut(s) 29, 109, 117, 295
NlaIV GGNNCC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 1 cut(s) 117
PauI GCGCGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 113
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 286
PscI ACATGT 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 46
PteI GCGCGC 1 cut(s) 20
RsaI GTAC 2 cut(s) 17, 189
RsaNI GTAC 2 cut(s) 16, 188
SatI GCNGC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 304
SetI ASST 1 cut(s) 127
SspMI CTAG 2 cut(s) 122, 270
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 98, 235, 306
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 1 cut(s) 86
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 186
VneI GTGCAC 1 cut(s) 300
XceI RCATGY 1 cut(s) 117
XspI CTAG 2 cut(s) 122, 270
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.