RLG00000002514

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001691
Physical Location & Seq
Forward (+)
35531878 .. 35534126
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002514

Sequence Viewer

Length: 408 bp
ATGATGAAGAAGTTGAAGCTATTCTTCCCTCTGCTGCTTATGCCCTTGCCTAGATACATATGCATCTTATACATAGCGGATGGTGAAGATGTAGATGGCTTGCTAACCAAGGGTGTTGAGATTACATGTTTCCATTTGGATGGTGCGCATTATATTGTTTATACACCCTCTAACCCACTTCTTTTTGTTGCTGTAAAGGATAATGATGGTCTATTGCAAATTGTTGATGATATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGCTACAATTTCTATGGATGATGGCATCCGGCCAAATGCAAACATGACTGATCTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGAAGGAAATGCTAGCCAGGTAAGTGATGGCCTAGAGAAGTACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

136

Amino Acids

14.9

Weight (kDa)

4.78

Isoelectric Point (pI)

17.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3727 PF12527 29 - 77 1.6e-07 Protein of unknown function (DUF3727)
Thiolase_N PF00108 82 - 130 4.8e-12 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 2 cut(s) 16, 328
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AoxI GGCC 2 cut(s) 293, 388
ApeKI GCWGC 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 95
AsuNHI GCTAGC 1 cut(s) 371
AvaII GGWCC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 21
BccI CCATC 7 cut(s) 74, 89, 134, 200, 278, 341, 380
BciT130I CCWGG 1 cut(s) 377
BfaI CTAG 3 cut(s) 51, 372, 392
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 72, 297
BmtI GCTAGC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 4 cut(s) 85, 145, 286, 288
BseLI CCNNNNNNNGG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 2 cut(s) 295, 390
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 295, 390
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 295, 390
BspLI GGNNCC 1 cut(s) 240
BspOI GCTAGC 1 cut(s) 375
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 377
BstC8I GCNNGC 4 cut(s) 101, 264, 333, 373
BstF5I GGATG 4 cut(s) 85, 145, 286, 288
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 129, 266
BstSCI CCNGG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 2 cut(s) 295, 390
BtsCI GGATG 4 cut(s) 85, 145, 286, 288
Cac8I GCNNGC 4 cut(s) 101, 264, 333, 373
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 400
CviAII CATG 3 cut(s) 126, 263, 307
CviJI RGCY 6 cut(s) 19, 99, 295, 331, 375, 390
CviKI_1 RGCY 6 cut(s) 19, 99, 295, 331, 375, 390
CviQI GTAC 1 cut(s) 400
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraI TTTAAA 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 3 cut(s) 129, 266, 310
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 364
FatI CATG 3 cut(s) 125, 262, 306
FauNDI CATATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 4 cut(s) 92, 152, 275, 293
Fsp4HI GCNGC 1 cut(s) 35
FspAI RTGCGCAY 1 cut(s) 147
FspBI CTAG 3 cut(s) 51, 372, 392
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 295, 390
HapII CCGG 1 cut(s) 292
HhaI GCGC 1 cut(s) 148
Hin1II CATG 3 cut(s) 129, 266, 310
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HpaII CCGG 1 cut(s) 292
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 356
HpyCH4V TGCA 4 cut(s) 63, 217, 302, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
Hsp92II CATG 3 cut(s) 129, 266, 310
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 313
LpnPI CCDG 6 cut(s) 234, 302, 305, 345, 362, 389
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 2 cut(s) 72, 297
MaeI CTAG 3 cut(s) 51, 372, 392
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 3 cut(s) 16, 19, 98
MluCI AATT 3 cut(s) 219, 270, 323
MnlI CCTC 4 cut(s) 39, 178, 247, 252
Mph1103I ATGCAT 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeI CATATG 1 cut(s) 59
NdeII GATC 1 cut(s) 313
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 3 cut(s) 129, 266, 310
NlaIV GGNNCC 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 2 cut(s) 129, 266
PaeI GCATGC 1 cut(s) 266
PciI ACATGT 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 1 cut(s) 36
PscI ACATGT 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 238
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 377
SetI ASST 2 cut(s) 21, 381
SfaNI GCATC 2 cut(s) 72, 297
SinI GGWCC 1 cut(s) 238
SmiI ATTTAAAT 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 138
SphI GCATGC 1 cut(s) 266
Sse9I AATT 3 cut(s) 219, 270, 323
SsiI CCGC 1 cut(s) 77
SspMI CTAG 3 cut(s) 51, 372, 392
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 108
SwaI ATTTAAAT 1 cut(s) 340
TasI AATT 3 cut(s) 219, 270, 323
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 238
XceI RCATGY 2 cut(s) 129, 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 3 cut(s) 51, 372, 392
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.