Rh6CG169900

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001691
Physical Location & Seq
Forward (+)
23280585 .. 23289368
8784 bp
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UTR
Exon/CDS
Intron
Rh6CG169900.1

Sequence Viewer

Length: 201 bp
ATGACTCTAAGCACCCAAGGGAATCCTAGAATGAGTACTGGACTACCGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCAAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGTAGGAAATGCTAGCCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

66

Amino Acids

7.14

Weight (kDa)

8.18

Isoelectric Point (pI)

10.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 28 - 65 1.9e-08 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 145
AoxI GGCC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 55
AsuNHI GCTAGC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 55
BccI CCATC 2 cut(s) 95, 158
BfaI CTAG 2 cut(s) 27, 189
BfmI CTRYAG 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 114
BmtI GCTAGC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 43, 70
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 103, 105
BseLI CCNNNNNNNGG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 43, 70
BseRI GAGGAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 112
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 57
BspOI GCTAGC 1 cut(s) 192
BsrI ACTGG 2 cut(s) 43, 70
BssECI CCNNGG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 150, 190, 194
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 103, 105
BstNSI RCATGY 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 103, 105
Cac8I GCNNGC 3 cut(s) 150, 190, 194
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 80, 124
CviJI RGCY 3 cut(s) 112, 148, 192
CviKI_1 RGCY 3 cut(s) 112, 148, 192
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 8
DraI TTTAAA 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 2 cut(s) 83, 127
FaiI YATR 3 cut(s) 81, 93, 125
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 79, 123
FokI GGATG 2 cut(s) 92, 110
FspBI CTAG 2 cut(s) 27, 189
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 109
Hin1II CATG 2 cut(s) 83, 127
HinfI GANTC 2 cut(s) 4, 22
HpaII CCGG 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 119, 152
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 83, 127
LpnPI CCDG 4 cut(s) 24, 51, 122, 162
LweI GCATC 1 cut(s) 114
MaeI CTAG 2 cut(s) 27, 189
MluCI AATT 2 cut(s) 87, 140
MnlI CCTC 2 cut(s) 64, 69
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 109
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 2 cut(s) 83, 127
NlaIV GGNNCC 1 cut(s) 57
NspI RCATGY 1 cut(s) 83
PfeI GAWTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 37
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 177
SgeI CNNG 8 cut(s) 29, 39, 51, 78, 92, 121, 136, 161
SinI GGWCC 1 cut(s) 55
SmiI ATTTAAAT 1 cut(s) 157
Sse9I AATT 2 cut(s) 87, 140
SspMI CTAG 2 cut(s) 27, 189
StyI CCWWGG 1 cut(s) 16
SwaI ATTTAAAT 1 cut(s) 157
TaaI ACNGT 1 cut(s) 178
TasI AATT 2 cut(s) 87, 140
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 87
XceI RCATGY 1 cut(s) 83
XspI CTAG 2 cut(s) 27, 189
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.