Rh1BG169200

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
27042978 .. 27046466
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG169200.1

Sequence Viewer

Length: 282 bp
ATGGAGGATGAAGTTAGAGAATTGGGGGAAAGAAGAGGAACTTCAAGTTTGGATGCCCAAGTTTTTTTTGTAAAGAAGGTGTTGGTTTTGGGGAGATCTGCTATGAAGGCGATGTTGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTATGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.05

Weight (kDa)

5.77

Isoelectric Point (pI)

16.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 46 - 93 9.7e-14 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 45, 214
AjnI CCWGG 1 cut(s) 261
AoxI GGCC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 124
BccI CCATC 3 cut(s) 164, 227, 266
BciT130I CCWGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 43, 183
BmtI GCTAGC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 4 cut(s) 13, 58, 172, 174
BseLI CCNNNNNNNGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 95
BspANI GGCC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 139
BssMI GATC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 219, 259
BstF5I GGATG 4 cut(s) 13, 58, 172, 174
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 107, 254
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 4 cut(s) 13, 58, 172, 174
Cac8I GCNNGC 2 cut(s) 219, 259
Cfr13I GGNCC 1 cut(s) 124
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 2 cut(s) 149, 193
CviJI RGCY 3 cut(s) 181, 217, 261
CviKI_1 RGCY 3 cut(s) 181, 217, 261
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 152, 196
FaiI YATR 4 cut(s) 104, 150, 162, 194
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 148, 192
FokI GGATG 4 cut(s) 20, 65, 161, 179
FspBI CTAG 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 178
Hin1II CATG 2 cut(s) 152, 196
HpaII CCGG 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 70, 100
HpyCH4V TGCA 3 cut(s) 188, 221, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 254
Hsp92II CATG 2 cut(s) 152, 196
Kzo9I GATC 1 cut(s) 95
LpnPI CCDG 6 cut(s) 120, 191, 231, 234, 248, 275
LweI GCATC 2 cut(s) 43, 183
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 1 cut(s) 45
MflI RGATCY 1 cut(s) 95
MluCI AATT 3 cut(s) 20, 156, 209
MnlI CCTC 3 cut(s) 29, 133, 138
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 107, 254
NdeII GATC 1 cut(s) 95
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 152, 196
NlaIV GGNNCC 1 cut(s) 126
NspI RCATGY 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 95
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 95
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 263
SetI ASST 2 cut(s) 81, 267
SfaNI GCATC 2 cut(s) 43, 183
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 124
SmiI ATTTAAAT 1 cut(s) 226
Sse9I AATT 3 cut(s) 20, 156, 209
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 261
SwaI ATTTAAAT 1 cut(s) 226
TasI AATT 3 cut(s) 20, 156, 209
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 24, 119
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.