RchiOBHm_Chr6g0286431

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
49883368 .. 49883920
553 bp
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UTR
Exon/CDS
Intron
PRQ25691

Sequence Viewer

Length: 348 bp
ATGAAAAATTTGTTTAATCTTTTGCAATCTATATCTTTTGATAATGTTTATACCTTCCCTGTGCTTAATATTGCCTTGAAAATCATGTTAAATAGGGCCTACCAAACTGCCATTTACAAAGCAAAGCGAGACCGTTTTAAGGATACTTTAGCTGATGATTTGTTGGCACCTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGATATAGTTCCCATCAGAACCGTCAACATGCAATATTGTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.93

Weight (kDa)

9.0

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 32 - 113 1.7e-12 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AcsI RAATTY 2 cut(s) 7, 199
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 79, 178, 205
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 7, 199
AspS9I GGNCC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 274, 326
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 123
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 123
BspANI GGCC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 134, 241, 328
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 296
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 2 cut(s) 85, 334
CviJI RGCY 3 cut(s) 98, 152, 255
CviKI_1 RGCY 3 cut(s) 98, 152, 255
DdeI CTNAG 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 88, 337
FaiI YATR 8 cut(s) 32, 51, 86, 188, 227, 294, 311, 335
FatI CATG 2 cut(s) 84, 333
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 2 cut(s) 88, 337
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 64, 172
HpyCH4III ACNGT 3 cut(s) 134, 241, 328
HpyCH4V TGCA 3 cut(s) 25, 276, 337
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 2 cut(s) 88, 337
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 6 cut(s) 72, 183, 237, 262, 264, 318
Lsp1109I GCAGC 1 cut(s) 296
MfeI CAATTG 1 cut(s) 267
MluCI AATT 3 cut(s) 7, 199, 267
MseI TTAA 4 cut(s) 15, 66, 89, 138
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 252
NlaIII CATG 2 cut(s) 88, 337
NlaIV GGNNCC 1 cut(s) 168
NspI RCATGY 1 cut(s) 337
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 15, 66, 89, 138
SatI GCNGC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 252
SetI ASST 3 cut(s) 56, 154, 172
Sse9I AATT 3 cut(s) 7, 199, 267
SspI AATATT 2 cut(s) 70, 341
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 134, 241, 328
TasI AATT 3 cut(s) 7, 199, 267
Tru1I TTAA 4 cut(s) 15, 66, 89, 138
Tru9I TTAA 4 cut(s) 15, 66, 89, 138
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 7, 199
XceI RCATGY 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.