Rh6DG217500

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001691
Physical Location & Seq
Forward (+)
38789019 .. 38792633
3615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG217500.1

Sequence Viewer

Length: 387 bp
ATGTTAAACAGGGCCTACCGAACTGCCATTTACAAAGCAAAGCGAGGCGGTTTTAAGGATACTTTAGTTGATGATTTGCTAGCACCTGTTTTGAAGGTAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACGATTTATGTGGTGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCTTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

128

Amino Acids

13.67

Weight (kDa)

8.37

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 4 - 75 3.1e-10 Thiolase, N-terminal domain
Thiolase_N PF00108 92 - 128 1.4e-09 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 227, 240
AgsI TTSAA 3 cut(s) 94, 121, 319
AjnI CCWGG 2 cut(s) 166, 366
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AoxI GGCC 2 cut(s) 12, 284
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 12, 230
AsuHPI GGTGA 1 cut(s) 284
AsuNHI GCTAGC 2 cut(s) 79, 362
AvaII GGWCC 1 cut(s) 230
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BbvI GCAGC 1 cut(s) 212
BccI CCATC 4 cut(s) 190, 269, 332, 371
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 168, 368
BciVI GTATCC 1 cut(s) 52
BfaI CTAG 2 cut(s) 80, 363
BfmI CTRYAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 168, 368
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 12, 230
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 168, 368
BmsI GCATC 1 cut(s) 288
BmtI GCTAGC 2 cut(s) 83, 366
BpmI CTGGAG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 240
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 168, 368
BseGI GGATG 2 cut(s) 201, 279
BseLI CCNNNNNNNGG 2 cut(s) 227, 240
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 2 cut(s) 14, 286
BsiSI CCGG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 227, 240
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 2 cut(s) 14, 286
BspACI CCGC 1 cut(s) 48
BspANI GGCC 2 cut(s) 14, 286
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 355
BspOI GCTAGC 2 cut(s) 83, 366
BsrI ACTGG 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 168, 368
Bst4CI ACNGT 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 81, 324, 364
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 201, 279
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 2 cut(s) 168, 368
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 166, 366
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 212
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 14, 286
BtsCI GGATG 2 cut(s) 201, 279
Cac8I GCNNGC 3 cut(s) 81, 324, 364
Cfr13I GGNCC 2 cut(s) 12, 230
CviAII CATG 2 cut(s) 255, 298
CviJI RGCY 5 cut(s) 14, 171, 286, 322, 366
CviKI_1 RGCY 5 cut(s) 14, 171, 286, 322, 366
DdeI CTNAG 1 cut(s) 176
DraI TTTAAA 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 166, 366
FaeI CATG 2 cut(s) 258, 301
FaiI YATR 6 cut(s) 104, 143, 210, 256, 268, 299
FaqI GGGAC 1 cut(s) 355
FatI CATG 2 cut(s) 254, 297
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 208, 266
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 2 cut(s) 80, 363
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 2 cut(s) 14, 286
HapII CCGG 1 cut(s) 283
Hin1II CATG 2 cut(s) 258, 301
HindIII AAGCTT 1 cut(s) 320
HpaII CCGG 1 cut(s) 283
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 192, 293, 326, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 258, 301
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 288
MaeI CTAG 2 cut(s) 80, 363
MaeIII GTNAC 1 cut(s) 257
MfeI CAATTG 1 cut(s) 183
MluCI AATT 3 cut(s) 115, 183, 314
MnlI CCTC 3 cut(s) 38, 239, 244
MseI TTAA 3 cut(s) 5, 54, 330
MspI CCGG 1 cut(s) 283
MspR9I CCNGG 2 cut(s) 168, 368
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 2 cut(s) 168, 368
MwoI GCNNNNNNNGC 1 cut(s) 359
NheI GCTAGC 2 cut(s) 79, 362
NlaIII CATG 2 cut(s) 258, 301
NlaIV GGNNCC 1 cut(s) 232
NspI RCATGY 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 166, 366
PspGI CCWGG 2 cut(s) 166, 366
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 12, 230
PstI CTGCAG 1 cut(s) 355
SaqAI TTAA 3 cut(s) 5, 54, 330
SatI GCNGC 1 cut(s) 201
Sau96I GGNCC 2 cut(s) 12, 230
ScrFI CCNGG 2 cut(s) 168, 368
SetI ASST 4 cut(s) 88, 99, 324, 372
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 230
SmiI ATTTAAAT 1 cut(s) 331
Sse9I AATT 3 cut(s) 115, 183, 314
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 80, 363
StyD4I CCNGG 2 cut(s) 166, 366
SwaI ATTTAAAT 1 cut(s) 331
TaaI ACNGT 1 cut(s) 157
TasI AATT 3 cut(s) 115, 183, 314
Tru1I TTAA 3 cut(s) 5, 54, 330
Tru9I TTAA 3 cut(s) 5, 54, 330
TseI GCWGC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XspI CTAG 2 cut(s) 80, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.