Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001691

Physical Location & Seq

Genomic Coordinates Forward (+)

65855317 .. 65860607

Gene Structure 5291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAGGTAGATGCTCGCAGCAAGCGCAGAGCAAGGGAAGCTGTCAAGGGACAATTATGGCACCTACGTGATCCCCAAGGGAAGCCACTAGGTGTAATGGGATGGTGGCCTTCAAGAGCTATGATCAACATTTTTAAAATGGTAGACTTAGCAGGAAAAGATGGCATTGCCAAGAGCAAGATCCGTAACTACTCGCTCTATTCCAGCCCAAAGACTCAAATCCAAGAAGAGGTGCATCACACTAAAGCTGTTCTTAGCCGAGGCTACACTTCTTTAATAGTCATAGGTCTAAAATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase HIRAN Tyr-DNA_phospho

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

10.33

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001691)

Species	Orthologous Gene IDs
malus_domestica	MD06G1073900.v1.1 MD10G1168400.v1.1 MD15G1364500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0267301 RchiOBHm_Chr6g0277641 RchiOBHm_Chr6g0277651 RchiOBHm_Chr6g0286431
rosa_laevigata	RLG00000002514
rosa_roxburghii	Rroxscaffold_1G00000350 Rroxscaffold_1G00036750 Rroxscaffold_2G00129790 Rroxscaffold_7G00199270
rosa_rugosa	Rorug01G0193100 Rorug02G0197300 Rorug02G0197300 Rorug03G0273100 Rorug05G0480700 Rorug06G0006800 Rorug06G0006900 Rorug06G0052300 Rorug07G0068800 Rorug07G0271500
rosa_samantha	Rh1BG169200 Rh1DG199700 Rh2AG202000 Rh2AG202200 Rh2BG215100 Rh2BG543900 Rh2CG206200 Rh2DG209400 Rh3CG296600 Rh3CG296700 Rh3DG292600 Rh4BG187200 Rh5BG466100 Rh5CG224300 Rh5CG487700 Rh6AG179700 Rh6BG138500 Rh6CG136000 Rh6CG169900 Rh6CG227100 Rh6CG255600 Rh6CG296100 Rh6DG122300 Rh6DG162300 Rh6DG217500 Rh6DG287900 Rh7CG193900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	65, 175
AdeI	CACNNNGTG	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	114
AleI	CACNNNNGTG	1 cut(s)	66
AluBI	AGCT	3 cut(s)	41, 119, 248
AluI	AGCT	3 cut(s)	41, 119, 248
AlwI	GGATC	2 cut(s)	65, 175
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	96, 155
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	76, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	76, 259
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	70, 123, 180
BspANI	GGCC	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	65, 175
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	76, 259
BssMI	GATC	3 cut(s)	70, 123, 180
BssT1I	CCWWGG	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	16, 23
BstDEI	CTNAG	2 cut(s)	148, 254
BstF5I	GGATG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	73, 126, 183
BstMBI	GATC	3 cut(s)	70, 123, 180
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 38
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	16, 23
CfoI	GCGC	1 cut(s)	27
CviJI	RGCY	8 cut(s)	41, 85, 109, 119, 207, 248, 258, 264
CviKI_1	RGCY	8 cut(s)	41, 85, 109, 119, 207, 248, 258, 264
DdeI	CTNAG	2 cut(s)	148, 254
DpnI	GATC	3 cut(s)	72, 125, 182
DpnII	GATC	3 cut(s)	70, 123, 180
DraI	TTTAAA	1 cut(s)	136
DraIII	CACNNNGTG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaiI	YATR	3 cut(s)	58, 122, 284
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 38
HpyF3I	CTNAG	2 cut(s)	148, 254
HpySE526I	ACGT	1 cut(s)	67
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	70, 123, 180
LpnPI	CCDG	3 cut(s)	138, 217, 282
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	72, 125, 182
MboI	GATC	3 cut(s)	70, 123, 180
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	2 cut(s)	223, 254
MseI	TTAA	2 cut(s)	135, 275
MslI	CAYNNNNRTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	24, 38
NdeII	GATC	3 cut(s)	70, 123, 180
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	135, 275
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	70, 123, 180
SchI	GAGTC	1 cut(s)	208
SetI	ASST	9 cut(s)	9, 43, 66, 70, 94, 121, 234, 250, 289
SfaNI	GCATC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	76
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	135, 275
Tru9I	TTAA	2 cut(s)	135, 275
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.