Rh5CG224300

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001691
Physical Location & Seq
Reverse (-)
22830999 .. 22862952
31954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG224300.1

Sequence Viewer

Length: 660 bp
ATGAAGCCAAGTGGAGATGGCCGGTGGGCACATATTGTGTGCGCGCTTTATGTTCCTGAGGTGTTCTTTAAGGACCCGGAAGGCCGAGAGGGGATTGATTGCTCAAAGGTTCCGAAGAGGAGGTGGAAGGAGAGGTGTTATGTTTGCAAGAGTGCAAGTGGGTGTGCTATTCAGTGCTCGGAAATCAAATGTCCTTTAGCGTTCAACGAGGATCTTTGCATAGAGTACAGGGAAGGAAGGAAGGGTGATTTTATAGCTGGGTTTTGCAGAACCCACACTGATTTGTGGGAAAAGAATTTGGATAGGAGGGAACGAGTGGCGCTGCAACATGCCAAATCTCTTTTCTCAAAAGAGGCAAATAATCATGCTCAACCTCTTGATCTTGCAAAACTAGCCCAAAGGCAACAAGAATATGGGAAGTTCAAGATTGTGGCTAGAACTGAAGCGCGTAAGCAGTTAGATTGTGATGGATTAATTATAGATCCTTGTGGGATGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

219

Amino Acids

24.61

Weight (kDa)

8.45

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HC5HC2H_2 PF13832 1 - 69 4.5e-18 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 11 - 69 3e-10 PHD-like zinc-binding domain
Thiolase_N PF00108 177 - 219 2.5e-12 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 512
AccII CGCG 2 cut(s) 44, 448
AclWI GGATC 2 cut(s) 219, 476
AcoI YGGCCR 2 cut(s) 19, 557
AcsI RAATTY 2 cut(s) 295, 534
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 3 cut(s) 205, 424, 592
AjnI CCWGG 1 cut(s) 639
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 2 cut(s) 219, 476
AoxI GGCC 3 cut(s) 19, 82, 557
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 2 cut(s) 295, 534
AseI ATTAAT 1 cut(s) 473
AspLEI GCGC 4 cut(s) 44, 46, 322, 448
AspS9I GGNCC 2 cut(s) 73, 502
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 635
AvaII GGWCC 2 cut(s) 73, 502
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 309
BccI CCATC 5 cut(s) 11, 461, 542, 605, 644
BciT130I CCWGG 1 cut(s) 641
BcnI CCSGG 1 cut(s) 77
BfaI CTAG 3 cut(s) 392, 435, 636
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 2 cut(s) 77, 641
Bme18I GGWCC 2 cut(s) 73, 502
BmgT120I GGNCC 2 cut(s) 73, 502
BmiI GGNNCC 3 cut(s) 75, 111, 504
BmrFI CCNGG 2 cut(s) 77, 641
BmsI GCATC 1 cut(s) 561
BmtI GCTAGC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 517
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 641
BseGI GGATG 3 cut(s) 498, 550, 552
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 517
BsePI GCGCGC 1 cut(s) 42
BseRI GAGGAG 2 cut(s) 133, 533
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 257
Bsh1236I CGCG 2 cut(s) 44, 448
BshFI GGCC 3 cut(s) 21, 84, 559
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 3 cut(s) 22, 77, 556
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 3 cut(s) 21, 84, 559
Bsp1286I GDGCHC 2 cut(s) 31, 179
Bsp143I GATC 3 cut(s) 211, 379, 481
BspANI GGCC 3 cut(s) 21, 84, 559
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 2 cut(s) 44, 448
BspLI GGNNCC 3 cut(s) 75, 111, 504
BspMAI CTGCAG 1 cut(s) 628
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 219, 476
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 21
BssHII GCGCGC 1 cut(s) 42
BssMI GATC 3 cut(s) 211, 379, 481
Bst2UI CCWGG 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 44, 597, 637
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 498, 550, 552
BstFNI CGCG 2 cut(s) 44, 448
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 4 cut(s) 44, 46, 322, 448
BstKTI GATC 3 cut(s) 214, 382, 484
BstMBI GATC 3 cut(s) 211, 379, 481
BstMWI GCNNNNNNNGC 2 cut(s) 392, 632
BstNI CCWGG 1 cut(s) 641
BstNSI RCATGY 2 cut(s) 332, 530
BstSCI CCNGG 2 cut(s) 75, 639
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 2 cut(s) 44, 448
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 2 cut(s) 211, 481
BstYI RGATCY 2 cut(s) 211, 481
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 3 cut(s) 21, 84, 559
BtsCI GGATG 3 cut(s) 498, 550, 552
BtsIMutI CAGTG 2 cut(s) 179, 276
Cac8I GCNNGC 3 cut(s) 44, 597, 637
CfoI GCGC 4 cut(s) 44, 46, 322, 448
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 73, 502
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 329, 365, 527, 571
CviJI RGCY 9 cut(s) 7, 21, 84, 257, 395, 434, 559, 595, 639
CviKI_1 RGCY 9 cut(s) 7, 21, 84, 257, 395, 434, 559, 595, 639
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 213, 381, 483
DpnII GATC 3 cut(s) 211, 379, 481
DraI TTTAAA 1 cut(s) 604
EaeI YGGCCR 2 cut(s) 19, 557
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 73, 502
Eco57I CTGAAG 1 cut(s) 462
Eco81I CCTNAGG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 639
FaeI CATG 4 cut(s) 332, 368, 530, 574
FaqI GGGAC 1 cut(s) 628
FatI CATG 4 cut(s) 328, 364, 526, 570
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 3 cut(s) 505, 539, 557
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 3 cut(s) 392, 435, 636
GlaI GCGC 4 cut(s) 43, 45, 321, 447
GluI GCNGC 1 cut(s) 323
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 3 cut(s) 21, 84, 559
HapII CCGG 3 cut(s) 22, 77, 556
HhaI GCGC 4 cut(s) 44, 46, 322, 448
Hin1II CATG 4 cut(s) 332, 368, 530, 574
Hin6I GCGC 4 cut(s) 42, 44, 320, 446
HinP1I GCGC 4 cut(s) 42, 44, 320, 446
HpaII CCGG 3 cut(s) 22, 77, 556
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 3 cut(s) 114, 181, 610
Hpy188III TCNNGA 3 cut(s) 56, 377, 424
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 5 cut(s) 74, 121, 227, 231, 235
HpyCH4V TGCA 9 cut(s) 147, 155, 219, 267, 325, 386, 566, 599, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 632
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 4 cut(s) 332, 368, 530, 574
HspAI GCGC 4 cut(s) 42, 44, 320, 446
Kzo9I GATC 3 cut(s) 211, 379, 481
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 561
MaeI CTAG 3 cut(s) 392, 435, 636
MalI GATC 3 cut(s) 213, 381, 483
MboI GATC 3 cut(s) 211, 379, 481
MboII GAAGA 1 cut(s) 127
MflI RGATCY 2 cut(s) 211, 481
MhlI GDGCHC 2 cut(s) 31, 179
MluCI AATT 4 cut(s) 295, 474, 534, 587
MseI TTAA 3 cut(s) 69, 473, 603
MspI CCGG 3 cut(s) 22, 77, 556
MspR9I CCNGG 2 cut(s) 77, 641
MvaI CCWGG 1 cut(s) 641
MvnI CGCG 2 cut(s) 44, 448
MwoI GCNNNNNNNGC 2 cut(s) 392, 632
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 211, 379, 481
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 4 cut(s) 332, 368, 530, 574
NlaIV GGNNCC 3 cut(s) 75, 111, 504
NmeAIII GCCGAG 1 cut(s) 110
NspI RCATGY 2 cut(s) 332, 530
PauI GCGCGC 1 cut(s) 42
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 639
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 3 cut(s) 75, 111, 504
PspPI GGNCC 2 cut(s) 73, 502
PspPPI RGGWCCY 1 cut(s) 73
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 2 cut(s) 211, 481
PteI GCGCGC 1 cut(s) 42
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 3 cut(s) 69, 473, 603
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 3 cut(s) 211, 379, 481
Sau96I GGNCC 2 cut(s) 73, 502
ScrFI CCNGG 2 cut(s) 77, 641
SduI GDGCHC 2 cut(s) 31, 179
SetI ASST 7 cut(s) 63, 111, 125, 137, 259, 376, 645
SfaNI GCATC 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 2 cut(s) 73, 502
SmiI ATTTAAAT 1 cut(s) 604
Sse9I AATT 4 cut(s) 295, 474, 534, 587
SspMI CTAG 3 cut(s) 392, 435, 636
StyD4I CCNGG 2 cut(s) 75, 639
SwaI ATTTAAAT 1 cut(s) 604
TasI AATT 4 cut(s) 295, 474, 534, 587
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 3 cut(s) 69, 473, 603
Tru9I TTAA 3 cut(s) 69, 473, 603
TscAI CASTG 2 cut(s) 179, 283
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 179, 283
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 73, 502
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 2 cut(s) 295, 534
XceI RCATGY 2 cut(s) 332, 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XspI CTAG 3 cut(s) 392, 435, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.